ReactionKernelIndexed_5_double_precision.h

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/*
 * Copyright (C) 2022-2025 The ESPResSo project
 * Copyright (C) 2020-2025 The waLBerla project
 *
 * This file is part of ESPResSo.
 *
 * ESPResSo is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * ESPResSo is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
 
// kernel generated with pystencils v1.4+1.ge851f4e, lbmpy v1.4+1.ge9efe34,
// sympy v1.12.1, lbmpy_walberla/pystencils_walberla from waLBerla commit
// 007e77e077ad9d22b5eed6f3d3118240993e553c
 
/*
 * Boundary class.
 * Adapted from the waLBerla source file
 * https://i10git.cs.fau.de/walberla/walberla/-/blob/3e54d4f2336e47168ad87e3caaf7b3b082d86ca7/python/pystencils_walberla/templates/Boundary.tmpl.h
 */
 
#pragma once
 
#include <core/DataTypes.h>
 
#include <blockforest/StructuredBlockForest.h>
#include <core/debug/Debug.h>
#include <domain_decomposition/BlockDataID.h>
#include <domain_decomposition/IBlock.h>
#include <field/FlagField.h>
#include <field/GhostLayerField.h>
 
#include <array>
#include <cassert>
#include <functional>
#include <memory>
#include <vector>
 
#if defined(__clang__)
#pragma clang diagnostic push
#pragma clang diagnostic ignored "-Wunused-variable"
#pragma clang diagnostic ignored "-Wunused-parameter"
#elif defined(__GNUC__) or defined(__GNUG__)
#pragma GCC diagnostic push
#pragma GCC diagnostic ignored "-Wunused-variable"
#pragma GCC diagnostic ignored "-Wunused-parameter"
#endif
 
#ifdef __GNUC__
#define RESTRICT __restrict__
#elif _MSC_VER
#define RESTRICT __restrict
#else
#define RESTRICT
#endif
 
#ifdef WALBERLA_BUILD_WITH_HALF_PRECISION_SUPPORT
using walberla::half;
#endif
 
namespace walberla {
namespace pystencils {
 
class ReactionKernelIndexed_5_double_precision {
public:
  struct IndexInfo {
    int32_t x;
    int32_t y;
    int32_t z;
    IndexInfo(int32_t x_, int32_t y_, int32_t z_) : x(x_), y(y_), z(z_) {}
    bool operator==(const IndexInfo &o) const {
      return x == o.x && y == o.y && z == o.z;
    }
  };
 
  class IndexVectors {
  public:
    using CpuIndexVector = std::vector<IndexInfo>;
 
    enum Type { ALL = 0, INNER = 1, OUTER = 2, NUM_TYPES = 3 };
 
    IndexVectors() = default;
    bool operator==(IndexVectors const &other) const {
      return other.cpuVectors_ == cpuVectors_;
    }
 
    auto &indexVector(Type t) { return cpuVectors_[t]; }
    auto const &indexVector(Type t) const { return cpuVectors_[t]; }
    IndexInfo *pointerCpu(Type t) {
      return cpuVectors_[t].empty() ? nullptr : cpuVectors_[t].data();
    }
 
    void syncGPU() {}
 
  private:
    std::vector<CpuIndexVector> cpuVectors_{NUM_TYPES};
  };
 
  ReactionKernelIndexed_5_double_precision(
      const std::shared_ptr<StructuredBlockForest> &blocks,
      BlockDataID rho_0ID_, BlockDataID rho_1ID_, BlockDataID rho_2ID_,
      BlockDataID rho_3ID_, BlockDataID rho_4ID_, double order_0,
      double order_1, double order_2, double order_3, double order_4,
      double rate_coefficient, double stoech_0, double stoech_1,
      double stoech_2, double stoech_3, double stoech_4)
      : rho_0ID(rho_0ID_), rho_1ID(rho_1ID_), rho_2ID(rho_2ID_),
        rho_3ID(rho_3ID_), rho_4ID(rho_4ID_), order_0_(order_0),
        order_1_(order_1), order_2_(order_2), order_3_(order_3),
        order_4_(order_4), rate_coefficient_(rate_coefficient),
        stoech_0_(stoech_0), stoech_1_(stoech_1), stoech_2_(stoech_2),
        stoech_3_(stoech_3), stoech_4_(stoech_4) {
    auto createIdxVector = [](IBlock *const, StructuredBlockStorage *const) {
      return new IndexVectors();
    };
    indexVectorID = blocks->addStructuredBlockData<IndexVectors>(
        createIdxVector, "IndexField_ReactionKernelIndexed_5_double_precision");
  }
 
  ReactionKernelIndexed_5_double_precision(
      BlockDataID indexVectorID_, BlockDataID rho_0ID_, BlockDataID rho_1ID_,
      BlockDataID rho_2ID_, BlockDataID rho_3ID_, BlockDataID rho_4ID_,
      double order_0, double order_1, double order_2, double order_3,
      double order_4, double rate_coefficient, double stoech_0, double stoech_1,
      double stoech_2, double stoech_3, double stoech_4)
      : indexVectorID(indexVectorID_), rho_0ID(rho_0ID_), rho_1ID(rho_1ID_),
        rho_2ID(rho_2ID_), rho_3ID(rho_3ID_), rho_4ID(rho_4ID_),
        order_0_(order_0), order_1_(order_1), order_2_(order_2),
        order_3_(order_3), order_4_(order_4),
        rate_coefficient_(rate_coefficient), stoech_0_(stoech_0),
        stoech_1_(stoech_1), stoech_2_(stoech_2), stoech_3_(stoech_3),
        stoech_4_(stoech_4) {}
 
  void run(IBlock *block);
 
  void operator()(IBlock *block) { run(block); }
 
  void inner(IBlock *block);
 
  void outer(IBlock *block);
 
  Vector3<double> getForce(IBlock * /*block*/) {
 
    WALBERLA_ABORT(
        "Boundary condition was not generated including force calculation.")
    return Vector3<double>(double_c(0.0));
  }
 
  std::function<void(IBlock *)> getSweep() {
    return [this](IBlock *b) { this->run(b); };
  }
 
  std::function<void(IBlock *)> getInnerSweep() {
    return [this](IBlock *b) { this->inner(b); };
  }
 
  std::function<void(IBlock *)> getOuterSweep() {
    return [this](IBlock *b) { this->outer(b); };
  }
 
  template <typename FlagField_T>
  void fillFromFlagField(const std::shared_ptr<StructuredBlockForest> &blocks,
                         ConstBlockDataID flagFieldID, FlagUID boundaryFlagUID,
                         FlagUID domainFlagUID) {
    for (auto &block : *blocks)
      fillFromFlagField<FlagField_T>(&block, flagFieldID, boundaryFlagUID,
                                     domainFlagUID);
  }
 
  template <typename FlagField_T>
  void fillFromFlagField(IBlock *block, ConstBlockDataID flagFieldID,
                         FlagUID boundaryFlagUID, FlagUID domainFlagUID) {
    auto *indexVectors = block->getData<IndexVectors>(indexVectorID);
    auto &indexVectorAll = indexVectors->indexVector(IndexVectors::ALL);
    auto &indexVectorInner = indexVectors->indexVector(IndexVectors::INNER);
    auto &indexVectorOuter = indexVectors->indexVector(IndexVectors::OUTER);
 
    auto *flagField = block->getData<FlagField_T>(flagFieldID);
 
    if (!(flagField->flagExists(boundaryFlagUID) and
          flagField->flagExists(domainFlagUID)))
      return;
 
    auto boundaryFlag = flagField->getFlag(boundaryFlagUID);
    auto domainFlag = flagField->getFlag(domainFlagUID);
 
    auto inner = flagField->xyzSize();
    inner.expand(cell_idx_t(-1));
 
    indexVectorAll.clear();
    indexVectorInner.clear();
    indexVectorOuter.clear();
 
    auto flagWithGLayers = flagField->xyzSizeWithGhostLayer();
    for (auto it = flagField->beginWithGhostLayerXYZ(); it != flagField->end();
         ++it) {
 
      if (!isFlagSet(it, boundaryFlag))
        continue;
      if (flagWithGLayers.contains(it.x() + cell_idx_c(0),
                                   it.y() + cell_idx_c(0),
                                   it.z() + cell_idx_c(0)) &&
          isFlagSet(it.neighbor(0, 0, 0, 0), domainFlag)) {
 
        auto element = IndexInfo(it.x(), it.y(), it.z(), 0);
 
        indexVectorAll.emplace_back(element);
        if (inner.contains(it.x(), it.y(), it.z()))
          indexVectorInner.emplace_back(element);
        else
          indexVectorOuter.emplace_back(element);
      }
    }
 
    indexVectors->syncGPU();
  }
 
private:
  void run_impl(IBlock *block, IndexVectors::Type type);
 
  BlockDataID indexVectorID;
 
public:
  BlockDataID rho_0ID;
  BlockDataID rho_1ID;
  BlockDataID rho_2ID;
  BlockDataID rho_3ID;
  BlockDataID rho_4ID;
  double order_0_;
  double order_1_;
  double order_2_;
  double order_3_;
  double order_4_;
  double rate_coefficient_;
  double stoech_0_;
  double stoech_1_;
  double stoech_2_;
  double stoech_3_;
  double stoech_4_;
};
 
#if defined(__clang__)
#pragma clang diagnostic pop
#elif defined(__GNUC__) or defined(__GNUG__)
#pragma GCC diagnostic pop
#endif
 
} // namespace pystencils
} // namespace walberla