ClusterAnalysis::Cluster Class Reference

Represents a single cluster of particles. More...

#include <Cluster.hpp>

Collaboration diagram for ClusterAnalysis::Cluster:

Public Member Functions
	Cluster (std::weak_ptr< BoxGeometry const > const &box_geo)
void	add_particle (const Particle &p)
	add a particle to the cluster
Utils::Vector3d	center_of_mass_subcluster (std::vector< int > const &particle_ids)
	Calculate the center of mass of the cluster.
Utils::Vector3d	center_of_mass ()
double	longest_distance ()
	Longest distance between any combination of two particles.
double	radius_of_gyration ()
	Calculate radius of gyration of the cluster.
double	radius_of_gyration_subcluster (std::vector< int > const &particle_ids)
std::pair< double, double >	fractal_dimension (double dr)
	Calculate the fractal dimension N(r) via r^d, where N(r) counts the number of particles in a sphere of radius n, and d denotes the fractal dimension.

Public Attributes
std::vector< int >	particles
	Ids of the particles in the cluster.

Detailed Description

Represents a single cluster of particles.

Definition at line 36 of file core/cluster_analysis/Cluster.hpp.

Constructor & Destructor Documentation

Cluster()

ClusterAnalysis::Cluster::Cluster ( std::weak_ptr< BoxGeometry const > const &  box_geo )

inlineexplicit

Definition at line 38 of file core/cluster_analysis/Cluster.hpp.

Member Function Documentation

add_particle()

void ClusterAnalysis::Cluster::add_particle ( const Particle &  p )

inline

add a particle to the cluster

Definition at line 43 of file core/cluster_analysis/Cluster.hpp.

References Particle::id(), and particles.

center_of_mass()

Utils::Vector3d ClusterAnalysis::Cluster::center_of_mass

(

)

Definition at line 46 of file Cluster.cpp.

References center_of_mass_subcluster(), and particles.

Referenced by fractal_dimension().

center_of_mass_subcluster()

Utils::Vector3d ClusterAnalysis::Cluster::center_of_mass_subcluster

(

std::vector< int > const &

particle_ids

)

Calculate the center of mass of the cluster.

Definition at line 52 of file Cluster.cpp.

References get_particle_data(), Particle::mass(), particles, Particle::pos(), and stream.

Referenced by center_of_mass(), and radius_of_gyration_subcluster().

fractal_dimension()

std::pair< double, double > ClusterAnalysis::Cluster::fractal_dimension

(

double

dr

)

Calculate the fractal dimension N(r) via r^d, where N(r) counts the number of particles in a sphere of radius n, and d denotes the fractal dimension.

The fitting is done by the Gnu Scientific Library.

Parameters

dr	increment for when constructing the discrete version of N(r)

Returns

fractal dimension, rms error of the fit

Definition at line 139 of file Cluster.cpp.

References center_of_mass(), get_particle_data(), particles, radius_of_gyration_subcluster(), runtimeErrorMsg, ClusterAnalysis::sort_indices(), and stream.

longest_distance()

double ClusterAnalysis::Cluster::longest_distance

(

)

Longest distance between any combination of two particles.

Definition at line 84 of file Cluster.cpp.

References get_particle_data(), particles, Particle::pos(), and stream.

radius_of_gyration()

double ClusterAnalysis::Cluster::radius_of_gyration

(

)

Calculate radius of gyration of the cluster.

Definition at line 104 of file Cluster.cpp.

References particles, and radius_of_gyration_subcluster().

radius_of_gyration_subcluster()

double ClusterAnalysis::Cluster::radius_of_gyration_subcluster

(

std::vector< int > const &

particle_ids

)

Definition at line 109 of file Cluster.cpp.

References center_of_mass_subcluster(), get_particle_data(), Particle::pos(), and stream.

Referenced by fractal_dimension(), and radius_of_gyration().

Member Data Documentation

particles

std::vector<int> ClusterAnalysis::Cluster::particles

Ids of the particles in the cluster.

Definition at line 41 of file core/cluster_analysis/Cluster.hpp.

Referenced by add_particle(), center_of_mass(), center_of_mass_subcluster(), fractal_dimension(), longest_distance(), and radius_of_gyration().

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The documentation for this class was generated from the following files:

• core/cluster_analysis/Cluster.hpp
• Cluster.cpp