dpd.hpp File Reference

Routines to use DPD as thermostat or pair force [38]. More...

#include "config/config.hpp"
#include "BoxGeometry.hpp"
#include "Particle.hpp"
#include "thermostat.hpp"
#include <utils/Vector.hpp>

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Namespaces
namespace	boost
namespace	boost::mpi

Functions
void	dpd_init (double kT, double time_step)
Utils::Vector3d	dpd_pair_force (Particle const &p1, Particle const &p2, DPDThermostat const &dpd, BoxGeometry const &box_geo, IA_parameters const &ia_params, Utils::Vector3d const &d, double dist, double dist2)
Utils::Vector9d	dpd_stress (boost::mpi::communicator const &comm)
	Viscous stress tensor of the DPD interaction.

Detailed Description

Routines to use DPD as thermostat or pair force [38].

Implementation in dpd.cpp.

Definition in file dpd.hpp.

Function Documentation

dpd_init()

void dpd_init	(	double	kT,
		double	time_step
	)

Definition at line 63 of file dpd.cpp.

References System::get_system(), and System::System::nonbonded_ias.

Referenced by Thermostat::Thermostat::recalc_prefactors().

dpd_pair_force()

Utils::Vector3d dpd_pair_force	(	Particle const &	p1,
		Particle const &	p2,
		DPDThermostat const &	dpd,
		BoxGeometry const &	box_geo,
		IA_parameters const &	ia_params,
		Utils::Vector3d const &	d,
		double	dist,
		double	dist2
	)

Definition at line 102 of file dpd.cpp.

References DPDParameters::cutoff, IA_parameters::dpd, dpd_noise(), dpd_pair_force(), Particle::id(), P, Particle::pos(), DPDParameters::pref, DPD_Parameters::radial, DPD_Parameters::trans, Particle::v(), and BoxGeometry::velocity_difference().

dpd_stress()

Utils::Vector9d dpd_stress

(

boost::mpi::communicator const &

comm

)

Viscous stress tensor of the DPD interaction.

This calculates the total viscous stress contribution of the DPD interaction. It contains only the dissipative contributions of the interaction without noise. It's calculated as the sum over all pair virials as

\[ \sigma^{\nu\mu} = V^{-1}\sum_i \sum_{j < i} r_{i,j}^{\nu} (- \gamma_{i,j} v_{i,j})^{\mu} \]

where \(\gamma_{i,j}\) is the (in general tensor valued) DPD friction coefficient for particles i and j, \(v_{i,j}\), \(r_{i,j}\) are their relative velocity and distance and \(V\) is the box volume.

Returns

Stress tensor contribution.

Definition at line 174 of file dpd.cpp.

References System::System::box_geo, dpd_viscous_stress_local(), Utils::flatten(), and System::get_system().

Referenced by ScriptInterface::Analysis::Analysis::do_call_method(), and Observables::DPDStress::operator()().