core Directory Reference

Directory dependency graph for core:

Directories
	accumulators
	actor
	algorithm
	analysis
	bond_breakage
	bonded_interactions
	cell_system
	cluster_analysis
	collision_detection
	constraints
	cuda
	ek
	electrostatics
	error_handling
	fft
	field_coupling
	galilei
	immersed_boundary
	integrators
	io
	lb
	lees_edwards
	magnetostatics
	nonbonded_interactions
	object-in-fluid
	observables
	p3m
	pair_criteria
	reaction_methods
	scafacos
	stokesian_dynamics
	system
	thermostats
	virtual_sites

Files
	aosoa_pack.hpp
	bond_error.cpp
	bond_error.hpp
	BondList.hpp
	bonds.cpp
	bonds.hpp
	BoxGeometry.hpp
	CellParticleIterator.hpp
	cells.cpp
	This file contains functions for the cell system.
	cells.hpp
	This file contains everything related to the global cell structure / cell system.
	communication.cpp
	communication.hpp
	This file contains the asynchronous MPI communication.
	custom_verlet_list.hpp
	dpd.cpp
	Implementation of dpd.hpp.
	dpd.hpp
	Routines to use DPD as thermostat or pair force [41].
	energy.cpp
	energy_inline.hpp
	Energy calculation.
	errorhandling.cpp
	Implementation of errorhandling.hpp.
	errorhandling.hpp
	This file contains the errorhandling code for severe errors, like a broken bond or illegal parameter combinations.
	exclusions.cpp
	exclusions.hpp
	forces.cpp
	Force calculation.
	forces.hpp
	Force calculation.
	forces_cabana.hpp
	forces_inline.hpp
	Force calculation.
	ghosts.cpp
	Ghost particles and particle exchange.
	ghosts.hpp
	Ghost particles and particle exchange.
	integrate.cpp
	Molecular dynamics integrator.
	integrate.hpp
	Molecular dynamics integrator.
	LocalBox.hpp
	MpiCallbacks.hpp
	Communication::MpiCallbacks manages MPI communication using a visitor pattern.
	npt.cpp
	npt.hpp
	Exports for the NpT code.
	Observable_stat.cpp
	Observable_stat.hpp
	PartCfg.cpp
	PartCfg.hpp
	Particle.hpp
	particle_node.cpp
	particle_node.hpp
	Particles creation and deletion.
	particle_reduction.hpp
	ParticleIterator.hpp
	ParticleList.hpp
	ParticlePropertyIterator.hpp
	ParticleRange.hpp
	polymer.cpp
	This file contains everything needed to create a start-up configuration of (possibly charged) polymer chains with counterions and salt molecules, assigning velocities to the particles and cross-linking the polymers if necessary.
	polymer.hpp
	This file contains everything needed to create a start-up configuration of polymer chains which may respect already existing particles and/or constraints.
	pressure.cpp
	pressure_inline.hpp
	propagation.cpp
	propagation.hpp
	PropagationMode.hpp
	PropagationPredicate.hpp
	random.hpp
	Random number generation using Philox.
	rattle.cpp
	rattle.hpp
	RATTLE algorithm ([4]).
	rotation.cpp
	Molecular dynamics integrator for rotational motion.
	rotation.hpp
	This file contains all subroutines required to process rotational motion.
	short_range_cabana.hpp
	short_range_loop.hpp
	signalhandling.hpp
	TabulatedPotential.cpp
	TabulatedPotential.hpp
	thermostat.cpp
	Implementation of thermostat.hpp.
	thermostat.hpp
	Implementation in thermostat.cpp.
	tuning.cpp
	tuning.hpp
	virtual_sites.cpp
	virtual_sites.hpp