22#include <blockforest/communication/UniformBufferedScheme.h>
23#include <field/AddToStorage.h>
24#include <field/FlagField.h>
25#include <field/FlagUID.h>
26#include <field/GhostLayerField.h>
27#include <field/communication/PackInfo.h>
28#include <field/iterators/IteratorMacros.h>
29#include <field/vtk/FlagFieldCellFilter.h>
30#include <field/vtk/VTKWriter.h>
31#include <stencil/D3Q27.h>
32#include <waLBerlaDefinitions.h>
33#if defined(__CUDACC__) and defined(WALBERLA_BUILD_WITH_CUDA)
34#include <gpu/AddGPUFieldToStorage.h>
35#include <gpu/communication/MemcpyPackInfo.h>
36#include <gpu/communication/UniformGPUScheme.h>
39#include "../BoundaryHandling.hpp"
40#include "../BoundaryPackInfo.hpp"
41#include "../utils/boundary.hpp"
42#include "../utils/types_conversion.hpp"
44#if defined(__CUDACC__) and defined(WALBERLA_BUILD_WITH_CUDA)
70template <std::size_t FluxCount = 13,
typename FloatType = double,
73#if not defined(WALBERLA_BUILD_WITH_CUDA)
75 "waLBerla was compiled without CUDA support");
77 using ContinuityKernel =
79 using DiffusiveFluxKernelUnthermalized =
80 typename detail::KernelTrait<FloatType,
81 Architecture>::DiffusiveFluxKernel;
82 using DiffusiveFluxKernelThermalized =
typename detail::KernelTrait<
83 FloatType, Architecture>::DiffusiveFluxKernelThermalized;
84 using AdvectiveFluxKernel =
85 typename detail::KernelTrait<FloatType,
86 Architecture>::AdvectiveFluxKernel;
87 using FrictionCouplingKernel =
88 typename detail::KernelTrait<FloatType,
89 Architecture>::FrictionCouplingKernel;
90 using DiffusiveFluxKernelElectrostaticUnthermalized =
91 typename detail::KernelTrait<
92 FloatType, Architecture>::DiffusiveFluxKernelElectrostatic;
93 using DiffusiveFluxKernelElectrostaticThermalized =
94 typename detail::KernelTrait<
95 FloatType, Architecture>::DiffusiveFluxKernelElectrostaticThermalized;
97 using DiffusiveFluxKernel = std::variant<DiffusiveFluxKernelUnthermalized,
98 DiffusiveFluxKernelThermalized>;
99 using DiffusiveFluxKernelElectrostatic =
100 std::variant<DiffusiveFluxKernelElectrostaticUnthermalized,
101 DiffusiveFluxKernelElectrostaticThermalized>;
120 template <
typename FT, lbmpy::Arch AT = lbmpy::Arch::CPU>
struct FieldTrait {
124 template <
class Field>
125 using PackInfo = field::communication::PackInfo<Field>;
126 template <
class Stencil>
128 blockforest::communication::UniformBufferedScheme<Stencil>;
129 template <
class Stencil>
131 blockforest::communication::UniformBufferedScheme<Stencil>;
133 using FlagField = walberla::FlagField<walberla::uint8_t>;
134#if defined(__CUDACC__) and defined(WALBERLA_BUILD_WITH_CUDA)
138 template <
class Field>
139 using MemcpyPackInfo = gpu::communication::MemcpyPackInfo<Field>;
142 template <
typename Stencil>
143 class UniformGPUScheme
144 :
public gpu::communication::UniformGPUScheme<Stencil> {
146 explicit UniformGPUScheme(
auto const &bf)
147 : gpu::communication::UniformGPUScheme<Stencil>(
153 template <
class Field>
using PackInfo = MemcpyPackInfo<Field>;
154 template <
class Stencil>
156 template <
class Stencil>
158 blockforest::communication::UniformBufferedScheme<Stencil>;
160 using GPUField = gpu::GPUField<FloatType>;
182 return numeric_cast<FloatType>(t);
190 return std::is_same_v<FloatType, double>;
194 FloatType m_diffusion;
199 bool m_friction_coupling;
223 std::unique_ptr<DiffusiveFluxKernelElectrostatic>
242 template <
typename Field>
244 auto const &blocks =
m_lattice->get_blocks();
245 auto const n_ghost_layers =
m_lattice->get_ghost_layers();
246#if defined(__CUDACC__) and defined(WALBERLA_BUILD_WITH_CUDA)
248 auto field_id = gpu::addGPUFieldToStorage<GPUField>(
249 blocks, tag, Field::F_SIZE, field::fzyx, n_ghost_layers);
250 if constexpr (std::is_same_v<Field, _DensityField>) {
252 auto field =
block->template getData<GPUField>(field_id);
255 }
else if constexpr (std::is_same_v<Field, _FluxField>) {
257 auto field =
block->template getData<GPUField>(field_id);
259 std::array<FloatType, FluxCount>{});
265 return field::addToStorage<Field>(blocks, tag, FloatType{value},
266 field::fzyx, n_ghost_layers);
271 auto const [lc, uc] =
m_lattice->get_local_grid_range(
true);
279 auto const [lc, uc] =
m_lattice->get_local_grid_range(
true);
287 typename stencil::D3Q27>;
290 typename stencil::D3Q27>;
295 template <
class Field>
302 double density,
bool advection,
bool friction_coupling,
303 bool thermalized,
unsigned int seed)
305 m_valency(
FloatType_c(valency)), m_ext_efield(ext_efield),
306 m_advection(advection), m_friction_coupling(friction_coupling),
310 auto const &blocks =
m_lattice->get_blocks();
311 auto const n_ghost_layers =
m_lattice->get_ghost_layers();
316 add_to_storage<_FluxField>(
"flux field",
FloatType_c(0.0));
324 set_diffusion_kernels();
329 blocks,
"flag field density", n_ghost_layers);
333 blocks,
"flag field flux", n_ghost_layers);
340 std::make_shared<BoundaryFullCommunicator>(blocks);
344 auto flux_boundary_packinfo = std::make_shared<
357 [[nodiscard]]
double get_kT() const noexcept
override {
return m_kT; }
365 return m_friction_coupling;
371 return static_cast<bool>(
374 [[nodiscard]]
unsigned int get_seed() const noexcept
override {
383 return {
static_cast<uint64_t
>(kernel->getTime_step())};
388 auto visitor = [m_diffusion = m_diffusion](
auto &kernel) {
389 kernel.setD(m_diffusion);
397 std::visit([m_kT = m_kT](
auto &kernel) { kernel.setKt(m_kT); },
404 [m_valency = m_valency](
auto &kernel) { kernel.setZ(m_valency); },
411 m_friction_coupling = friction_coupling;
417 auto const kernel_electrostatic =
418 std::get_if<DiffusiveFluxKernelElectrostaticThermalized>(
421 if (!kernel or !kernel_electrostatic) {
422 throw std::runtime_error(
"This EK instance is unthermalized");
425 static_cast<uint32_t
>(std::numeric_limits<uint_t>::max()));
426 kernel->setTime_step(
static_cast<uint32_t
>(counter));
427 kernel_electrostatic->setTime_step(
static_cast<uint32_t
>(counter));
431 m_ext_efield = field;
434 [
this](
auto &kernel) {
445 (*m_full_communication)();
460 void set_diffusion_kernels() {
461 auto kernel = DiffusiveFluxKernelUnthermalized(
463 m_diffusive_flux = std::make_unique<DiffusiveFluxKernel>(std::move(kernel));
465 auto kernel_electrostatic = DiffusiveFluxKernelElectrostaticUnthermalized(
472 std::make_unique<DiffusiveFluxKernelElectrostatic>(
473 std::move(kernel_electrostatic));
480 auto kernel = DiffusiveFluxKernelThermalized(
482 grid_dim[0], grid_dim[1], grid_dim[2], seed, 0);
484 auto kernel_electrostatic = DiffusiveFluxKernelElectrostaticThermalized(
493 for (
auto &
block : *blocks) {
494 kernel.configure(blocks, &
block);
495 kernel_electrostatic.configure(blocks, &
block);
498 m_diffusive_flux = std::make_unique<DiffusiveFluxKernel>(std::move(kernel));
500 std::make_unique<DiffusiveFluxKernelElectrostatic>(
501 std::move(kernel_electrostatic));
504 void kernel_boundary_density() {
506 (*m_boundary_density)(&
block);
510 void kernel_boundary_flux() {
512 (*m_boundary_flux)(&
block);
516 void kernel_continuity() {
518 (*m_continuity).run(&
block);
522 void kernel_diffusion() {
524 std::visit([&
block](
auto &kernel) { kernel.run(&
block); },
530 kernel->setTime_step(kernel->getTime_step() + 1u);
532 auto *kernel_electrostatic =
533 std::get_if<DiffusiveFluxKernelElectrostaticThermalized>(
535 kernel_electrostatic->setTime_step(kernel_electrostatic->getTime_step() +
540 void kernel_advection(std::size_t
const velocity_id) {
542 BlockDataID(velocity_id));
548 void kernel_friction_coupling(std::size_t
const force_id,
549 double const lb_density) {
550 auto kernel = FrictionCouplingKernel(
558 void kernel_diffusion_electrostatic(std::size_t
const potential_id) {
559 auto const phiID = BlockDataID(potential_id);
560 std::visit([phiID](
auto &kernel) { kernel.setPhiID(phiID); },
564 std::visit([&
block](
auto &kernel) { kernel.run(&
block); },
568 if (
auto *kernel_electrostatic =
569 std::get_if<DiffusiveFluxKernelElectrostaticThermalized>(
571 kernel_electrostatic->setTime_step(kernel_electrostatic->getTime_step() +
576 kernel->setTime_step(kernel->getTime_step() + 1u);
580 void kernel_migration() {}
582 void update_boundary_fields() {
590 auto &vtk_handle = it.second;
591 if (vtk_handle->enabled) {
592 vtk::writeFiles(vtk_handle->ptr)();
593 vtk_handle->execution_count++;
599 void integrate(std::size_t potential_id, std::size_t velocity_id,
600 std::size_t force_id,
double lb_density)
override {
603 update_boundary_fields();
609 if (potential_id == walberla::BlockDataID{}) {
610 throw std::runtime_error(
"Walberla EK: electrostatic potential enabled "
611 "but no field accessible. potential id is " +
612 std::to_string(potential_id));
614 kernel_diffusion_electrostatic(potential_id);
620 kernel_boundary_flux();
623 if (force_id == walberla::BlockDataID{}) {
624 throw std::runtime_error(
"Walberla EK: friction coupling enabled but "
625 "no force field accessible. force_id is " +
626 std::to_string(force_id) +
627 ". Hint: LB may be inactive.");
629 kernel_friction_coupling(force_id, lb_density);
633 if (velocity_id == walberla::BlockDataID{}) {
634 throw std::runtime_error(
"Walberla EK: advection enabled but no "
635 "velocity field accessible. velocity_id is " +
636 std::to_string(velocity_id) +
637 ". Hint: LB may be inactive.");
639 kernel_advection(velocity_id);
640 kernel_boundary_flux();
645 kernel_boundary_density();
653 static_assert(std::is_same_v<std::size_t, walberla::uint_t>);
669 [[nodiscard]] std::optional<double>
671 bool consider_ghosts =
false)
const override {
677 auto const density_field =
682 [[nodiscard]] std::vector<double>
685 std::vector<double> out;
687 uint_t values_size = 0u;
690 if (
auto const ci =
get_interval(lattice, lower_corner, upper_corner)) {
691 out = std::vector<double>(ci->numCells());
695 lattice, lower_corner, upper_corner, block_offset,
block)) {
696 auto const density_field =
699 assert(values.size() == bci->numCells());
701 values_size += bci->numCells();
703 auto kernel = [&values, &out](
unsigned const block_index,
704 unsigned const local_index,
706 out[local_index] = double_c(values[block_index]);
712 assert(values_size == ci->numCells());
719 std::vector<double>
const &
density)
override {
722 if (
auto const ci =
get_interval(lattice, lower_corner, upper_corner)) {
723 assert(
density.size() == ci->numCells());
727 lattice, lower_corner, upper_corner, block_offset,
block)) {
728 auto const density_field =
730 std::vector<FloatType> values(bci->numCells());
732 auto kernel = [&values, &
density](
unsigned const block_index,
733 unsigned const local_index,
735 values[block_index] = numeric_cast<FloatType>(
density[local_index]);
745 [[nodiscard]] std::optional<Utils::Vector3d>
747 bool consider_ghosts =
false)
const override {
753 auto const flux_field =
761 std::vector<double> out;
763 uint_t values_size = 0;
766 if (
auto const ci =
get_interval(lattice, lower_corner, upper_corner)) {
767 out = std::vector<double>(3u * ci->numCells());
771 lattice, lower_corner, upper_corner, block_offset,
block)) {
772 auto const flux_field =
775 assert(values.size() == 3u * bci->numCells());
777 values_size += 3u * bci->numCells();
780 auto kernel = [&values, &out,
this](
unsigned const block_index,
781 unsigned const local_index,
786 for (uint_t f = 0u; f < 3u; ++f) {
787 out[3u * local_index + f] = double_c(vec[f]);
790 for (uint_t f = 0u; f < 3u; ++f) {
791 out[3u * local_index + f] =
792 double_c(values[3u * block_index + f]);
800 assert(values_size == 3u * ci->numCells());
822 node, to_vector3<FloatType>(
flux), *bc);
826 [[nodiscard]] std::optional<Utils::Vector3d>
828 bool consider_ghosts =
false)
const override {
859 [[nodiscard]] std::optional<double>
861 bool consider_ghosts =
false)
const override {
871 std::vector<std::optional<double>>
const &
density)
override {
873 if (
auto const ci =
get_interval(lattice, lower_corner, upper_corner)) {
875 auto const lower_cell = ci->min();
876 auto const upper_cell = ci->max();
878 assert(
density.size() == ci->numCells());
879 for (
auto x = lower_cell.x(); x <= upper_cell.x(); ++x) {
880 for (
auto y = lower_cell.y(); y <= upper_cell.y(); ++y) {
881 for (
auto z = lower_cell.z(); z <= upper_cell.z(); ++z) {
884 auto const &opt = *it;
898 [[nodiscard]] std::vector<std::optional<double>>
902 std::vector<std::optional<double>> out;
904 if (
auto const ci =
get_interval(lattice, lower_corner, upper_corner)) {
906 auto const lower_cell = ci->min();
907 auto const upper_cell = ci->max();
908 auto const n_values = ci->numCells();
909 out.reserve(n_values);
910 for (
auto x = lower_cell.x(); x <= upper_cell.x(); ++x) {
911 for (
auto y = lower_cell.y(); y <= upper_cell.y(); ++y) {
912 for (
auto z = lower_cell.z(); z <= upper_cell.z(); ++z) {
915 out.emplace_back(double_c(
918 out.emplace_back(std::nullopt);
923 assert(out.size() == n_values);
930 std::vector<std::optional<Utils::Vector3d>>
const &
flux)
override {
933 if (
auto const ci =
get_interval(lattice, lower_corner, upper_corner)) {
935 auto const lower_cell = ci->min();
936 auto const upper_cell = ci->max();
937 auto it =
flux.begin();
938 assert(
flux.size() == ci->numCells());
939 for (
auto x = lower_cell.x(); x <= upper_cell.x(); ++x) {
940 for (
auto y = lower_cell.y(); y <= upper_cell.y(); ++y) {
941 for (
auto z = lower_cell.z(); z <= upper_cell.z(); ++z) {
944 auto const &opt = *it;
947 node, to_vector3<FloatType>(*opt), *bc);
958 [[nodiscard]] std::vector<std::optional<Utils::Vector3d>>
962 std::vector<std::optional<Utils::Vector3d>> out;
964 if (
auto const ci =
get_interval(lattice, lower_corner, upper_corner)) {
966 auto const lower_cell = ci->min();
967 auto const upper_cell = ci->max();
968 auto const n_values = ci->numCells();
969 out.reserve(n_values);
970 for (
auto x = lower_cell.x(); x <= upper_cell.x(); ++x) {
971 for (
auto y = lower_cell.y(); y <= upper_cell.y(); ++y) {
972 for (
auto z = lower_cell.z(); z <= upper_cell.z(); ++z) {
978 out.emplace_back(std::nullopt);
983 assert(out.size() == n_values);
988 [[nodiscard]] std::vector<bool>
991 std::vector<bool> out;
993 if (
auto const ci =
get_interval(lattice, lower_corner, upper_corner)) {
995 auto const lower_cell = ci->min();
996 auto const upper_cell = ci->max();
997 auto const n_values = ci->numCells();
998 out.reserve(n_values);
999 for (
auto x = lower_cell.x(); x <= upper_cell.x(); ++x) {
1000 for (
auto y = lower_cell.y(); y <= upper_cell.y(); ++y) {
1001 for (
auto z = lower_cell.z(); z <= upper_cell.z(); ++z) {
1008 assert(out.size() == n_values);
1023 [[nodiscard]] std::optional<bool>
1025 bool consider_ghosts)
const override {
1029 return std::nullopt;
1034 [[nodiscard]] std::optional<bool>
1036 bool consider_ghosts)
const override {
1039 return std::nullopt;
1044 [[nodiscard]] std::optional<bool>
1046 bool consider_ghosts =
false)
const override {
1049 return std::nullopt;
1056 const std::vector<int> &raster_flat,
1057 const std::vector<double> &data_flat)
override {
1066 const std::vector<int> &raster_flat,
1067 const std::vector<double> &data_flat)
override {
1085 [[nodiscard]]
bool is_gpu() const noexcept
override {
1092 vtk_obj.addCellExclusionFilter(fluid_filter);
1096 template <
typename VecType, u
int_t F_SIZE_ARG,
typename OutputType>
1097 class VTKWriter :
public vtk::BlockCellDataWriter<OutputType, F_SIZE_ARG> {
1099 VTKWriter(ConstBlockDataID
const &block_id, std::string
const &
id,
1100 FloatType unit_conversion)
1101 : vtk::BlockCellDataWriter<OutputType, F_SIZE_ARG>(id),
1105 void configure()
override { WALBERLA_ASSERT_NOT_NULLPTR(this->block_); }
1108 cell_idx_t
const z) {
1109 return (
static_cast<std::size_t
>(x) *
m_dims[2] *
m_dims[1] +
1110 static_cast<std::size_t
>(y) *
m_dims[2] +
1111 static_cast<std::size_t
>(z)) *
1125 template <
typename OutputType =
float>
1127 :
public VTKWriter<std::vector<FloatType>, 1u, OutputType> {
1131 using Base::evaluate;
1134 OutputType
evaluate(cell_idx_t
const x, cell_idx_t
const y,
1135 cell_idx_t
const z, cell_idx_t
const)
override {
1136 WALBERLA_ASSERT(!this->
m_content.empty());
1142 template <
typename OutputType =
float>
1144 :
public VTKWriter<std::vector<FloatType>, 3u, OutputType> {
1148 using Base::evaluate;
1151 OutputType
evaluate(cell_idx_t
const x, cell_idx_t
const y,
1152 cell_idx_t
const z, cell_idx_t
const f)
override {
1153 WALBERLA_ASSERT(!this->
m_content.empty());
1159 template <
typename OutputType =
float>
1162 using Base = vtk::BlockCellDataWriter<OutputType, 1u>;
1163 using Base::evaluate;
1165 std::string
const &
id, FlagUID
const &boundary_flag)
1166 : vtk::BlockCellDataWriter<OutputType, 1u>(id),
1172 WALBERLA_ASSERT_NOT_NULLPTR(this->block_);
1177 OutputType
evaluate(cell_idx_t
const x, cell_idx_t
const y,
1178 cell_idx_t
const z, cell_idx_t
const)
override {
1194 int flag_observables)
override {
1196 auto const unit_conversion =
FloatType_c(units.at(
"density"));
1197 auto const blocks =
m_lattice->get_blocks();
1198 WALBERLA_ASSERT_NOT_NULLPTR(blocks);
1199 auto density_writer = make_shared<DensityVTKWriter<float>>(
1201 auto before_function = [
this, blocks, density_writer]() {
1202 for (
auto &
block : *blocks) {
1203 auto *density_field =
1207 auto const *flag_field =
1209 auto const boundary_flag = flag_field->getFlag(
Boundary_flag);
1210 WALBERLA_FOR_ALL_CELLS_XYZ(flag_field, {
1211 if (flag_field->isFlagSet(x, y, z, boundary_flag)) {
1212 Cell const global(offset[0] + x, offset[1] + y, offset[2] + z);
1213 auto const density =
1214 m_boundary_density->get_node_value_at_boundary(global);
1215 Cell const local(x, y, z);
1216 ek::accessor::Scalar::set(density_field, density, local);
1220 auto const bci = density_field->xyzSize();
1221 density_writer->set_content(
1223 density_writer->set_dims(
1224 Vector3<uint_t>(bci.xSize(), bci.ySize(), bci.zSize()));
1228 vtk_obj.addBeforeFunction(std::move(before_function));
1229 vtk_obj.addCellDataWriter(density_writer);
1232 auto const unit_conversion =
FloatType_c(units.at(
"flux"));
1233 auto const blocks =
m_lattice->get_blocks();
1234 WALBERLA_ASSERT_NOT_NULLPTR(blocks);
1235 auto flux_writer = make_shared<FluxVTKWriter<float>>(
1237 auto before_function = [
this, blocks, flux_writer]() {
1238 for (
auto &
block : *blocks) {
1240 auto const bci = flux_field->xyzSize();
1242 auto const block_offset =
m_lattice->get_block_corner(
block,
true);
1243 std::size_t index = 0u;
1244 for (
auto x = bci.xMin(); x <= bci.xMax(); ++x) {
1245 for (
auto y = bci.yMin(); y <= bci.yMax(); ++y) {
1246 for (
auto z = bci.zMin(); z <= bci.zMax(); ++z) {
1251 values[3u * index + 0u] = vec[0];
1252 values[3u * index + 1u] = vec[1];
1253 values[3u * index + 2u] = vec[2];
1259 flux_writer->set_content(std::move(values));
1260 flux_writer->set_dims(
1261 Vector3<uint_t>(bci.xSize(), bci.ySize(), bci.zSize()));
1264 vtk_obj.addBeforeFunction(std::move(before_function));
1265 vtk_obj.addCellDataWriter(flux_writer);
Vector implementation and trait types for boost qvm interoperability.
Interface of a lattice-based electrokinetic model.
std::map< std::string, std::shared_ptr< VTKHandle > > m_vtk_auto
VTK writers that are executed automatically.
std::unordered_map< std::string, double > units_map
Class that runs and controls the BlockForest in waLBerla.
auto const & get_grid_dimensions() const
walberla::blockforest::StructuredBlockForest Lattice_T
std::pair< Utils::Vector3i, Utils::Vector3i > get_local_grid_range(bool with_halo=false) const
Utils::Vector3i get_block_corner(IBlock const &block, bool lower) const
Boundary class optimized for sparse data.
vtk::BlockCellDataWriter< OutputType, 1u > Base
FlagUID const m_boundary_flag
FlagField const * m_flag_field
OutputType evaluate(cell_idx_t const x, cell_idx_t const y, cell_idx_t const z, cell_idx_t const) override
BoundaryVTKWriter(ConstBlockDataID const &flag_field_id, std::string const &id, FlagUID const &boundary_flag)
ConstBlockDataID const m_flag_field_id
FlagField::flag_t m_boundary_flag_value
void configure() override
OutputType evaluate(cell_idx_t const x, cell_idx_t const y, cell_idx_t const z, cell_idx_t const) override
OutputType evaluate(cell_idx_t const x, cell_idx_t const y, cell_idx_t const z, cell_idx_t const f) override
void set_dims(Vector3< uint_t > dims)
std::size_t get_first_index(cell_idx_t const x, cell_idx_t const y, cell_idx_t const z)
VTKWriter(ConstBlockDataID const &block_id, std::string const &id, FloatType unit_conversion)
void set_content(VecType content)
void configure() override
Class that runs and controls the EK on waLBerla.
~EKinWalberlaImpl() override=default
void set_slice_flux_boundary(Utils::Vector3i const &lower_corner, Utils::Vector3i const &upper_corner, std::vector< std::optional< Utils::Vector3d > > const &flux) override
void set_kT(double kT) override
std::optional< double > get_node_density_at_boundary(Utils::Vector3i const &node, bool consider_ghosts=false) const override
double get_kT() const noexcept override
std::unique_ptr< DiffusiveFluxKernelElectrostatic > m_diffusive_flux_electrostatic
walberla::FlagField< walberla::uint8_t > FlagField
void set_friction_coupling(bool friction_coupling) override
void set_rng_state(uint64_t counter) override
void integrate(std::size_t potential_id, std::size_t velocity_id, std::size_t force_id, double lb_density) override
bool set_node_density_boundary(Utils::Vector3i const &node, double density) override
void set_slice_density(Utils::Vector3i const &lower_corner, Utils::Vector3i const &upper_corner, std::vector< double > const &density) override
BlockDataID m_density_field_id
std::shared_ptr< FullCommunicator > m_full_communication
std::bitset< GhostComm::SIZE > m_pending_ghost_comm
std::vector< double > get_slice_density(Utils::Vector3i const &lower_corner, Utils::Vector3i const &upper_corner) const override
void update_density_boundary_from_shape(const std::vector< int > &raster_flat, const std::vector< double > &data_flat) override
void update_flux_boundary_from_shape(const std::vector< int > &raster_flat, const std::vector< double > &data_flat) override
std::vector< bool > get_slice_is_boundary(Utils::Vector3i const &lower_corner, Utils::Vector3i const &upper_corner) const override
void set_ext_efield(Utils::Vector3d const &field) override
bool set_node_density(Utils::Vector3i const &node, double density) override
double get_diffusion() const noexcept override
void set_valency(double valency) override
bool is_thermalized() const noexcept override
auto add_to_storage(std::string const tag, FloatType value)
Convenience function to add a field with a custom allocator.
std::optional< double > get_node_density(Utils::Vector3i const &node, bool consider_ghosts=false) const override
std::size_t get_density_id() const noexcept override
unsigned int get_seed() const noexcept override
BlockDataID m_flag_field_flux_id
std::unique_ptr< ContinuityKernel > m_continuity
double get_valency() const noexcept override
typename FieldTrait< FloatType, Architecture >::FluxField FluxField
void clear_flux_boundaries() override
std::shared_ptr< BoundaryModelFlux > m_boundary_flux
void set_slice_density_boundary(Utils::Vector3i const &lower_corner, Utils::Vector3i const &upper_corner, std::vector< std::optional< double > > const &density) override
void reset_flux_boundary_handling(std::shared_ptr< BlockStorage > const &blocks)
bool get_advection() const noexcept override
std::optional< Utils::Vector3d > get_node_flux_vector(Utils::Vector3i const &node, bool consider_ghosts=false) const override
typename FieldTrait< FloatType, Architecture >::template BoundaryCommScheme< typename stencil::D3Q27 > BoundaryFullCommunicator
typename FieldTrait< FloatType, Architecture >::template RegularCommScheme< typename stencil::D3Q27 > FullCommunicator
void reallocate_density_boundary_field()
std::optional< uint64_t > get_rng_state() const override
void set_advection(bool advection) override
BlockDataID m_flag_field_density_id
bool remove_node_from_density_boundary(Utils::Vector3i const &node) override
typename FieldTrait< FloatType, Architecture >::template PackInfo< Field > PackInfo
bool get_friction_coupling() const noexcept override
Utils::Vector3d get_ext_efield() const noexcept override
stencil::D3Q27 Stencil
Stencil for collision and streaming operations.
LatticeWalberla const & get_lattice() const noexcept override
bool remove_node_from_flux_boundary(Utils::Vector3i const &node) override
bool is_double_precision() const noexcept override
void integrate_vtk_writers() override
typename FieldTrait< FloatType, Architecture >::DensityField DensityField
FloatType FloatType_c(T t)
bool is_gpu() const noexcept override
void clear_density_boundaries() override
std::optional< bool > get_node_is_flux_boundary(Utils::Vector3i const &node, bool consider_ghosts) const override
void ghost_communication() override
LatticeWalberla::Lattice_T BlockStorage
Lattice model (e.g.
void ghost_communication_boundary()
void reset_density_boundary_handling(std::shared_ptr< BlockStorage > const &blocks)
std::vector< std::optional< Utils::Vector3d > > get_slice_flux_at_boundary(Utils::Vector3i const &lower_corner, Utils::Vector3i const &upper_corner) const override
ResourceObserver m_mpi_cart_comm_observer
std::vector< std::optional< double > > get_slice_density_at_boundary(Utils::Vector3i const &lower_corner, Utils::Vector3i const &upper_corner) const override
BlockDataID m_flux_field_id
void register_vtk_field_writers(walberla::vtk::VTKOutput &vtk_obj, LatticeModel::units_map const &units, int flag_observables) override
std::optional< Utils::Vector3d > get_node_flux_at_boundary(Utils::Vector3i const &node, bool consider_ghosts=false) const override
std::vector< double > get_slice_flux_vector(Utils::Vector3i const &lower_corner, Utils::Vector3i const &upper_corner) const override
typename FieldTrait< FloatType >::DensityField _DensityField
std::shared_ptr< BoundaryFullCommunicator > m_boundary_communicator
std::optional< bool > get_node_is_density_boundary(Utils::Vector3i const &node, bool consider_ghosts) const override
std::unique_ptr< DiffusiveFluxKernel > m_diffusive_flux
void set_diffusion(double diffusion) override
std::size_t stencil_size() const noexcept override
FlagUID const Boundary_flag
Flag for boundary cells.
bool set_node_flux_boundary(Utils::Vector3i const &node, Utils::Vector3d const &flux) override
void reallocate_flux_boundary_field()
typename FieldTrait< FloatType >::FluxField _FluxField
std::optional< bool > get_node_is_boundary(Utils::Vector3i const &node, bool consider_ghosts=false) const override
std::unique_ptr< BoundaryModelDensity > m_boundary_density
EKinWalberlaImpl(std::shared_ptr< LatticeWalberla > lattice, double diffusion, double kT, double valency, Utils::Vector3d const &ext_efield, double density, bool advection, bool friction_coupling, bool thermalized, unsigned int seed)
std::shared_ptr< LatticeWalberla > m_lattice
Block forest.
FlagUID const Domain_flag
Flag for domain cells, i.e.
void register_vtk_field_filters(walberla::vtk::VTKOutput &vtk_obj) override
void setup_boundary_handle(std::shared_ptr< LatticeWalberla > lattice, std::shared_ptr< Boundary_T > boundary)
static double * block(double *p, std::size_t index, std::size_t size)
auto get_vector(GhostLayerField< double, uint_t{13u}> const *flux_field, Cell const &cell)
void initialize(GhostLayerField< double, uint_t{13u}> *flux_field, std::array< double, 13 > const &values)
void initialize(GhostLayerField< double, 1u > *scalar_field, double const &value)
void set(GhostLayerField< double, 1u > *scalar_field, double const &value, Cell const &cell)
auto get(GhostLayerField< double, 1u > const *scalar_field, Cell const &cell)
static FUNC_PREFIX double *RESTRICT const double *RESTRICT const int64_t const int64_t const int64_t const int64_t const int64_t const int64_t const int64_t const int64_t const int64_t const int64_t const uint32_t uint32_t uint32_t uint32_t uint32_t uint32_t uint32_t seed
\file PackInfoPdfDoublePrecision.cpp \author pystencils
auto to_vector3d(Vector3< T > const &v) noexcept
std::vector< double > fill_3D_scalar_array(std::vector< double > const &vec_flat, Utils::Vector3i const &grid_size)
void set_boundary_from_grid(BoundaryModel &boundary, LatticeWalberla const &lattice, std::vector< int > const &raster_flat, std::vector< DataType > const &data_flat)
void copy_block_buffer(CellInterval const &bci, CellInterval const &ci, Utils::Vector3i const &block_offset, Utils::Vector3i const &lower_corner, auto &&kernel)
Synchronize data between a sliced block and a container.
std::optional< BlockAndCell > get_block_and_cell(::LatticeWalberla const &lattice, signed_integral_vector auto const &node, bool consider_ghost_layers)
Cell to_cell(signed_integral_vector auto const &xyz)
ResourceObserver get_mpi_cart_comm_observer()
Get an observer on waLBerla's MPI Cartesian communicator status.
std::optional< walberla::cell::CellInterval > get_block_interval(::LatticeWalberla const &lattice, Utils::Vector3i const &lower_corner, Utils::Vector3i const &upper_corner, Utils::Vector3i const &block_offset, IBlock const &block)
std::optional< walberla::cell::CellInterval > get_interval(::LatticeWalberla const &lattice, Utils::Vector3i const &lower_corner, Utils::Vector3i const &upper_corner)
std::vector< Utils::Vector3d > fill_3D_vector_array(std::vector< double > const &vec_flat, Utils::Vector3i const &grid_size)
Observer to monitor the lifetime of a shared resource.
blockforest::communication::UniformBufferedScheme< Stencil > RegularCommScheme
GhostLayerField< FT, FluxCount > FluxField
field::communication::PackInfo< Field > PackInfo
GhostLayerField< FT, 1 > DensityField
blockforest::communication::UniformBufferedScheme< Stencil > BoundaryCommScheme
GhostCommFlags
Ghost communication operations.
@ DENS
density communication
@ FLB
flux boundary communication