ESPResSo
Extensible Simulation Package for Research on Soft Matter Systems
Loading...
Searching...
No Matches
data_struct.hpp
Go to the documentation of this file.
1/*
2 * Copyright (C) 2010-2024 The ESPResSo project
3 * Copyright (C) 2002,2003,2004,2005,2006,2007,2008,2009,2010
4 * Max-Planck-Institute for Polymer Research, Theory Group
5 *
6 * This file is part of ESPResSo.
7 *
8 * ESPResSo is free software: you can redistribute it and/or modify
9 * it under the terms of the GNU General Public License as published by
10 * the Free Software Foundation, either version 3 of the License, or
11 * (at your option) any later version.
12 *
13 * ESPResSo is distributed in the hope that it will be useful,
14 * but WITHOUT ANY WARRANTY; without even the implied warranty of
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
16 * GNU General Public License for more details.
17 *
18 * You should have received a copy of the GNU General Public License
19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
20 */
21
22#pragma once
23
24#include "config/config.hpp"
25
26#if defined(P3M) or defined(DP3M)
27
28#include "common.hpp"
29
30#include <array>
31#include <cassert>
32#include <memory>
33#include <tuple>
34#include <utility>
35#include <vector>
36
37template <typename FloatType> class FFTBackend;
38template <typename FloatType> class FFTBuffers;
39
40/**
41 * @brief Base class for the electrostatics and magnetostatics P3M algorithms.
42 * Contains a handle to the FFT backend, information about the local mesh,
43 * the differential operator, and various buffers.
44 */
45template <typename FloatType> struct p3m_data_struct {
46 using value_type = FloatType;
47
48 explicit p3m_data_struct(P3MParameters &&parameters)
49 : params{std::move(parameters)} {}
50
51 /** @brief P3M base parameters. */
53 /** @brief Local mesh properties. */
55 /** @brief Local mesh FFT buffers. */
57
58 /**
59 * @brief Spatial differential operator in k-space.
60 * We use an i*k differentiation.
61 */
62 std::array<std::vector<int>, 3> d_op;
63
64 /** Calculate the Fourier transformed differential operator.
65 * Remark: This is done on the level of n-vectors and not k-vectors,
66 * i.e. the prefactor @f$ 2i\pi/L @f$ is missing!
67 */
71
72 /** @brief Force optimised influence function (k-space) */
73 std::vector<FloatType> g_force;
74 /** @brief Energy optimised influence function (k-space) */
75 std::vector<FloatType> g_energy;
76 /** @brief FFT algorithm. */
77 std::unique_ptr<FFTBackend<FloatType>> fft;
78 /** @brief FFT buffers. */
79 std::unique_ptr<FFTBuffers<FloatType>> fft_buffers;
80
81 void init();
82
84 auto const mesh_size_ptr = fft->get_mesh_size();
85 auto const mesh_start_ptr = fft->get_mesh_start();
86 for (auto i = 0u; i < 3u; ++i) {
87 mesh.size[i] = mesh_size_ptr[i];
88 mesh.start[i] = mesh_start_ptr[i];
89 }
90 mesh.stop = mesh.start + mesh.size;
91 fft_buffers->update_mesh_views(mesh);
92 }
93
94 template <typename T, class... Args> void make_fft_instance(Args... args) {
95 assert(fft == nullptr);
96 fft = std::make_unique<T>(std::as_const(local_mesh), args...);
97 }
98
99 template <typename T, class... Args> void make_mesh_instance(Args... args) {
100 assert(fft_buffers == nullptr);
101 fft_buffers = std::make_unique<T>(std::as_const(local_mesh), args...);
102 }
103};
104
105/**
106 * @brief API for the FFT backend of the P3M algorithm.
107 */
108template <typename FloatType> class FFTBackend {
109protected:
111
112public:
116 virtual ~FFTBackend() = default;
117 virtual void init(P3MParameters const &params) = 0;
118 virtual int get_ca_mesh_size() const noexcept = 0;
119 virtual int get_ks_pnum() const noexcept = 0;
120 /** @brief Carry out the forward FFT of the scalar mesh. */
121 virtual void forward_fft(FloatType *rs_mesh) = 0;
122 /** @brief Carry out the backward FFT of the scalar mesh. */
123 virtual void backward_fft(FloatType *rs_mesh) = 0;
124 /** @brief Get indices of the k-space data layout. */
125 virtual std::tuple<int, int, int> get_permutations() const = 0;
126 virtual std::array<int, 3u> const &get_mesh_size() const = 0;
127 virtual std::array<int, 3u> const &get_mesh_start() const = 0;
128};
129
130/**
131 * @brief API for the FFT mesh buffers.
132 */
133template <typename FloatType> class FFTBuffers {
134protected:
136
137public:
141 virtual ~FFTBuffers() = default;
142 /** @brief Initialize the meshes. */
143 virtual void init_meshes(int ca_mesh_size) = 0;
144 /** @brief Initialize the halo buffers. */
145 virtual void init_halo() = 0;
146 /** @brief Update scalar mesh halo with data from neighbors (accumulation). */
147 virtual void perform_scalar_halo_gather() = 0;
148 /** @brief Update vector mesh halo with data from neighbors (accumulation). */
149 virtual void perform_vector_halo_gather() = 0;
150 /** @brief Update scalar mesh halo of all neighbors. */
151 virtual void perform_scalar_halo_spread() = 0;
152 /** @brief Update vector mesh halo of all neighbors. */
153 virtual void perform_vector_halo_spread() = 0;
154 /**
155 * @brief Get pointer to scalar mesh begin.
156 * Should only be used by @ref FFTBackend.
157 */
158 virtual FloatType *get_scalar_mesh() = 0;
159 /**
160 * @brief Get pointer to vector mesh begin.
161 * Should only be used by @ref FFTBackend.
162 */
163 virtual std::array<FloatType *, 3u> get_vector_mesh() = 0;
164 /**
165 * @brief Update the scalar and vector mesh views in @ref P3MFFTMesh
166 * to point to the new underlying data structures.
167 */
169};
170
171#endif // defined(P3M) or defined(DP3M)
API for the FFT backend of the P3M algorithm.
virtual void init(P3MParameters const &params)=0
virtual int get_ca_mesh_size() const noexcept=0
virtual ~FFTBackend()=default
virtual void backward_fft(FloatType *rs_mesh)=0
Carry out the backward FFT of the scalar mesh.
bool check_complex_residuals
virtual std::array< int, 3u > const & get_mesh_size() const =0
P3MLocalMesh const & local_mesh
virtual int get_ks_pnum() const noexcept=0
virtual void forward_fft(FloatType *rs_mesh)=0
Carry out the forward FFT of the scalar mesh.
virtual std::array< int, 3u > const & get_mesh_start() const =0
FFTBackend(P3MLocalMesh const &local_mesh)
virtual std::tuple< int, int, int > get_permutations() const =0
Get indices of the k-space data layout.
API for the FFT mesh buffers.
P3MLocalMesh const & local_mesh
virtual void init_meshes(int ca_mesh_size)=0
Initialize the meshes.
virtual void perform_scalar_halo_gather()=0
Update scalar mesh halo with data from neighbors (accumulation).
virtual void perform_vector_halo_gather()=0
Update vector mesh halo with data from neighbors (accumulation).
virtual std::array< FloatType *, 3u > get_vector_mesh()=0
Get pointer to vector mesh begin.
virtual void perform_vector_halo_spread()=0
Update vector mesh halo of all neighbors.
virtual void init_halo()=0
Initialize the halo buffers.
virtual void update_mesh_views(P3MFFTMesh< FloatType > &out)=0
Update the scalar and vector mesh views in P3MFFTMesh to point to the new underlying data structures.
FFTBuffers(P3MLocalMesh const &local_mesh)
virtual ~FFTBuffers()=default
virtual void perform_scalar_halo_spread()=0
Update scalar mesh halo of all neighbors.
virtual FloatType * get_scalar_mesh()=0
Get pointer to scalar mesh begin.
This file contains the defaults for ESPResSo.
Definition fft.cpp:74
Common functions for dipolar and charge P3M.
std::array< std::vector< int >, 3 > calc_p3m_mesh_shift(Utils::Vector3i const &mesh_size, bool zero_out_midpoint=false)
Calculate indices that shift P3MParameters::mesh by mesh/2.
static SteepestDescentParameters params
Currently active steepest descent instance.
Local mesh FFT buffers.
Properties of the local mesh.
Structure to hold P3M parameters and some dependent variables.
Utils::Vector3i mesh
number of mesh points per coordinate direction (>0), in real space.
Base class for the electrostatics and magnetostatics P3M algorithms.
std::unique_ptr< FFTBuffers< FloatType > > fft_buffers
FFT buffers.
void make_fft_instance(Args... args)
P3MLocalMesh local_mesh
Local mesh properties.
P3MParameters params
P3M base parameters.
void update_mesh_views()
std::array< std::vector< int >, 3 > d_op
Spatial differential operator in k-space.
std::unique_ptr< FFTBackend< FloatType > > fft
FFT algorithm.
std::vector< FloatType > g_energy
Energy optimised influence function (k-space)
P3MFFTMesh< FloatType > mesh
Local mesh FFT buffers.
FloatType value_type
p3m_data_struct(P3MParameters &&parameters)
void make_mesh_instance(Args... args)
void calc_differential_operator()
Calculate the Fourier transformed differential operator.
std::vector< FloatType > g_force
Force optimised influence function (k-space)