ESPResSo
Extensible Simulation Package for Research on Soft Matter Systems
Loading...
Searching...
No Matches
elc.hpp
Go to the documentation of this file.
1/*
2 * Copyright (C) 2010-2026 The ESPResSo project
3 * Copyright (C) 2002,2003,2004,2005,2006,2007,2008,2009,2010
4 * Max-Planck-Institute for Polymer Research, Theory Group
5 *
6 * This file is part of ESPResSo.
7 *
8 * ESPResSo is free software: you can redistribute it and/or modify
9 * it under the terms of the GNU General Public License as published by
10 * the Free Software Foundation, either version 3 of the License, or
11 * (at your option) any later version.
12 *
13 * ESPResSo is distributed in the hope that it will be useful,
14 * but WITHOUT ANY WARRANTY; without even the implied warranty of
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
16 * GNU General Public License for more details.
17 *
18 * You should have received a copy of the GNU General Public License
19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
20 */
21
22/** @file
23 * @brief ELC algorithm for long-range Coulomb interactions.
24 *
25 * Implementation of the ELC method for the calculation of the electrostatic
26 * interaction in two dimensional periodic systems. For details on the method
27 * see MMM in general. The ELC method works together with any three-dimensional
28 * method, for example @ref p3m.hpp "P3M", with metallic boundary conditions.
29 */
30
31#pragma once
32
33#include <config/config.hpp>
34
35#ifdef ESPRESSO_P3M
36
37#include "actor/traits.hpp"
38
40
41#include "BoxGeometry.hpp"
42#include "Particle.hpp"
43#include "ParticleRange.hpp"
44#include "aosoa_pack.hpp"
45
46#include <utils/Vector.hpp>
47#include <utils/math/sqr.hpp>
48
49#include <cstddef>
50#include <memory>
51#include <optional>
52#include <string>
53#include <type_traits>
54#include <utility>
55#include <variant>
56
58
59namespace traits {
60template <>
62} // namespace traits
63
64/** @brief Parameters for the ELC method */
65struct elc_data {
66 elc_data(double maxPWerror, double gap_size, double far_cut, bool neutralize,
67 double delta_top, double delta_bot, bool const_pot, double pot_diff);
68
69 /**
70 * @brief Maximal allowed pairwise error for the potential and force.
71 * Note that this counts for the plain 1/r contribution
72 * alone, without the prefactor and the charge prefactor.
73 */
74 double maxPWerror;
75 /** Size of the empty gap. Note that ELC relies on the user to make sure
76 * that this condition is fulfilled.
77 */
78 double gap_size;
79 /** Up to where particles can be found. */
80 double box_h;
81 /**
82 * @brief Cutoff of the exponential sum.
83 * Since in all other MMM methods this is the far formula,
84 * it is given the same name here.
85 */
86 double far_cut;
87 /** Squared value of #far_cut. */
88 double far_cut2;
89 /** Flag whether #far_cut was set by the user, or calculated by ESPResSo.
90 * In the latter case, the cutoff will be adapted if important parameters,
91 * such as the box dimensions, change.
92 */
94
95 /// @brief Flag whether there is any dielectric contrast in the system.
97 /// @brief Flag whether a constant potential difference is applied.
99 /**
100 * @brief Flag whether the box is neutralized by a homogeneous background.
101 * If true, use a homogeneous neutralizing background for non-neutral
102 * systems. Unlike the 3D case, this background adds an additional
103 * force pointing towards the system center, and the gap size
104 * enters into the value of the forces, so be careful with this.
105 */
107
108 /// dielectric contrast in the upper part of the simulation cell.
110 /// dielectric contrast in the lower part of the simulation cell.
112 /// @brief Constant potential difference.
113 double pot_diff;
114
115 /** Layer around the dielectric contrast in which we trick around. */
117 /** The space that is finally left. */
118 double space_box;
119
120 /// pairwise contributions from lower and upper layers
122 std::size_t p1, std::size_t p2,
123 auto &aosoa, double q1q2,
124 auto &&kernel) const {
125 if (aosoa.position(p1, 2) < space_layer) {
126 auto const q_eff = delta_mid_bot * q1q2;
127 auto pos2 = aosoa.get_vector_at(aosoa.position, p2);
128 auto pos1 = aosoa.get_vector_at(aosoa.position, p1);
129 pos1[2] *= -1.;
130 auto const d = box_geo.get_mi_vector(pos2, pos1);
131 kernel(q_eff, d);
132 }
133 if (aosoa.position(p1, 2) > (box_h - space_layer)) {
134 auto const q_eff = delta_mid_top * q1q2;
135 auto const z = 2. * box_h - aosoa.position(p1, 2);
136 auto pos2 = aosoa.get_vector_at(aosoa.position, p2);
137 auto pos1 = aosoa.get_vector_at(aosoa.position, p1);
138 pos1[2] = 2. * box_h - pos1[2];
139 auto const d = box_geo.get_mi_vector(pos2, pos1);
140 kernel(q_eff, d);
141 }
142 }
143
144 /// pairwise contributions from lower and upper layers
146 Utils::Vector3d const &pos1,
147 Utils::Vector3d const &pos2, double q1q2,
148 auto &&kernel) const {
149 if (pos1[2] < space_layer) {
150 auto const q_eff = delta_mid_bot * q1q2;
151 auto const d = box_geo.get_mi_vector(pos2, {pos1[0], pos1[1], -pos1[2]});
152 kernel(q_eff, d);
153 }
154 if (pos1[2] > (box_h - space_layer)) {
155 auto const q_eff = delta_mid_top * q1q2;
156 auto const z = 2. * box_h - pos1[2];
157 auto const d = box_geo.get_mi_vector(pos2, {pos1[0], pos1[1], z});
158 kernel(q_eff, d);
159 }
160 }
161
162 /// self energies of top and bottom layers with their virtual images
164 BoxGeometry const &box_geo,
165 ParticleRange const &particles) const {
166 auto energy = 0.;
167 for (auto const &p : particles) {
169 box_geo, p.pos(), p.pos(), Utils::sqr(p.q()),
170 [&](double q1q2, Utils::Vector3d const &d) {
171 energy += p3m.pair_energy(q1q2, d.norm());
172 });
173 }
174 return energy;
175 }
176
177 /// forces of particles in border layers with themselves
179 BoxGeometry const &box_geo,
180 ParticleRange const &particles) const {
181 for (auto &p : particles) {
183 box_geo, p.pos(), p.pos(), Utils::sqr(p.q()),
184 [&](double q1q2, Utils::Vector3d const &d) {
185 p.force() += p3m.pair_force(q1q2, d, d.norm());
186 });
187 }
188 }
189};
190
192 : public Coulomb::Actor<ElectrostaticLayerCorrection> {
193 using BaseSolver = std::variant<std::shared_ptr<CoulombP3M>>;
194
197
198 /** Electrostatics solver that is adapted. */
200
202
204 visit_base_solver(
205 [this](auto &solver) { solver->bind_system(m_system.lock()); });
206 sanity_checks_periodicity();
207 sanity_checks_cell_structure();
209 sanity_checks_dielectric_contrasts();
210 /* Most ELC parameters do not depend on the P3M parameters,
211 * but the P3M parameters depend on the ELC parameters during tuning,
212 * therefore ELC needs to be tuned before P3M. */
213 recalc_box_h();
214 recalc_far_cut();
215 visit_base_solver([](auto &solver) { solver->on_activation(); });
216 /* With dielectric contrasts, the ELC space layer depends
217 * on the P3M real-space cutoff, and the P3M FFT parameters
218 * depend on the ELC space layer */
220 recalc_space_layer();
221 visit_base_solver([](auto &actor) { actor->init(); });
222 }
223 }
224 /** @brief Recalculate all box-length-dependent parameters. */
226 visit_base_solver([](auto &actor) { actor->on_boxl_change(); });
227 recalc_box_h();
228 recalc_far_cut();
229 recalc_space_layer();
230 }
231 void on_node_grid_change() const {
232 visit_base_solver([](auto &solver) { solver->on_node_grid_change(); });
233 }
235 sanity_checks_periodicity();
236 visit_base_solver([](auto &solver) { solver->on_periodicity_change(); });
237 }
239 sanity_checks_cell_structure();
240 visit_base_solver([](auto &solver) { solver->on_cell_structure_change(); });
241 recalc_box_h();
242 recalc_far_cut();
244 recalc_space_layer();
245 visit_base_solver([](auto &actor) { actor->init(); });
246 }
247 }
248 /** @brief Recalculate all derived parameters. */
249 void init() {
250 visit_base_solver([](auto &actor) { actor->init(); });
251 recalc_box_h();
252 recalc_far_cut();
253 recalc_space_layer();
254 }
255
256 void sanity_checks() const {
257 sanity_checks_periodicity();
258 sanity_checks_cell_structure();
260 sanity_checks_dielectric_contrasts();
261 visit_base_solver([](auto &actor) { actor->sanity_checks(); });
262 }
263
264 /**
265 * @brief Veto real-space cutoff values that are incompatible with ELC.
266 * When ELC is used with dielectric contrasts, the short-range cutoff needs
267 * to be smaller than the gap size to allow placement of the image charges.
268 */
269 std::optional<std::string> veto_r_cut(double r_cut) const {
271 return {std::string("conflict with ELC w/ dielectric contrasts")};
272 }
273 return {};
274 }
275
277 double dist) const {
278 return std::visit(
279 [&](auto &solver) { return solver->pair_force(q1q2, d, dist); },
281 }
282
283 /** @brief Calculate short-range pair energy correction. */
284 double pair_energy_correction(std::size_t p1, std::size_t p2, auto &aosoa,
285 double q1q2) const {
286 double energy = 0.;
288 energy = std::visit(
289 [this, &aosoa, p1, p2, q1q2](auto &p3m_ptr) {
290 auto const &p3m = *p3m_ptr;
291 auto energy = 0.;
293 *m_box_geo, p1, p2, aosoa, q1q2,
294 [&](double q_eff, Utils::Vector3d const &d) {
295 energy += p3m.pair_energy(q_eff, d.norm());
296 });
298 *m_box_geo, p2, p1, aosoa, q1q2,
299 [&](double q_eff, Utils::Vector3d const &d) {
300 energy += p3m.pair_energy(q_eff, d.norm());
301 });
302 return energy / 2.;
303 },
305 }
306 return energy;
307 }
308
309 /** @brief Calculate short-range pair energy correction. */
311 Utils::Vector3d const &pos2,
312 double q1q2) const {
313 double energy = 0.;
315 energy = std::visit(
316 [this, &pos1, &pos2, q1q2](auto &p3m_ptr) {
317 auto const &p3m = *p3m_ptr;
318 auto energy = 0.;
320 *m_box_geo, pos1, pos2, q1q2,
321 [&](double q_eff, Utils::Vector3d const &d) {
322 energy += p3m.pair_energy(q_eff, d.norm());
323 });
325 *m_box_geo, pos2, pos1, q1q2,
326 [&](double q_eff, Utils::Vector3d const &d) {
327 energy += p3m.pair_energy(q_eff, d.norm());
328 });
329 return energy / 2.;
330 },
332 }
333 return energy;
334 }
335
336 /** @brief Add short-range pair force corrections. */
338 Utils::Vector3d const &pos2,
341 double q1q2) const {
343 std::visit(
344 [this, &pos1, &pos2, &p1f_asym, &p2f_asym, q1q2](auto &p3m_ptr) {
345 auto const &p3m = *p3m_ptr;
347 *m_box_geo, pos1, pos2, q1q2,
348 [&](double q_eff, Utils::Vector3d const &d) {
349 p1f_asym += p3m.pair_force(q_eff, d, d.norm());
350 });
352 *m_box_geo, pos2, pos1, q1q2,
353 [&](double q_eff, Utils::Vector3d const &d) {
354 p2f_asym += p3m.pair_force(q_eff, d, d.norm());
355 });
356 },
358 }
359 }
360
361 /** @brief Calculate long-range electrostatic energy with corrections. */
362 double long_range_energy() const;
363 /** @brief Accumulate long-range electrostatic forces with corrections. */
364 void add_long_range_forces() const;
365
366private:
367 /** Check if a charged particle is in the gap region. */
368 void check_gap(Particle const &p) const;
369 double tune_far_cut() const;
370 void adapt_solver();
371 /** pairwise contributions from the lowest and top layers to the energy */
372 double dipole_energy() const;
373 void add_dipole_force() const;
374 double z_energy() const;
375 void add_z_force() const;
376
377 void recalc_box_h();
378 void recalc_far_cut() {
379 if (elc.far_calculated) {
380 elc.far_cut = tune_far_cut();
381 }
383 }
384 void recalc_space_layer();
385
386 void sanity_checks_cell_structure() const {}
387 void sanity_checks_periodicity() const;
388 void sanity_checks_dielectric_contrasts() const;
389
390 /// the force calculation
391 void add_force() const;
392 /// the energy calculation
393 double calc_energy() const;
394
395 void visit_base_solver(auto &&visitor) const {
396 std::visit(visitor, base_solver);
397 }
398};
399
400#endif // ESPRESSO_P3M
Vector implementation and trait types for boost qvm interoperability.
ESPRESSO_ATTR_ALWAYS_INLINE Utils::Vector3< T > get_mi_vector(Utils::Vector3< T > const &a, Utils::Vector3< T > const &b) const
Get the minimum-image vector between two coordinates.
A range of particles.
std::weak_ptr< System > m_system
T norm() const
Definition Vector.hpp:159
cudaStream_t stream[1]
CUDA streams for parallel computing on CPU and GPU.
DEVICE_QUALIFIER constexpr T sqr(T x)
Calculates the SQuaRe of x.
Definition sqr.hpp:28
P3M algorithm for long-range Coulomb interaction.
P3M solver.
Definition p3m.hpp:55
void on_boxl_change()
Recalculate all box-length-dependent parameters.
Definition elc.hpp:225
void on_periodicity_change() const
Definition elc.hpp:234
void sanity_checks() const
Definition elc.hpp:256
void add_long_range_forces() const
Accumulate long-range electrostatic forces with corrections.
Definition elc.cpp:1246
std::optional< std::string > veto_r_cut(double r_cut) const
Veto real-space cutoff values that are incompatible with ELC.
Definition elc.hpp:269
std::variant< std::shared_ptr< CoulombP3M > > BaseSolver
Definition elc.hpp:193
BaseSolver base_solver
Electrostatics solver that is adapted.
Definition elc.hpp:199
double pair_energy_correction(Utils::Vector3d const &pos1, Utils::Vector3d const &pos2, double q1q2) const
Calculate short-range pair energy correction.
Definition elc.hpp:310
Utils::Vector3d pair_force(double q1q2, Utils::Vector3d const &d, double dist) const
Definition elc.hpp:276
void add_pair_force_corrections(Utils::Vector3d const &pos1, Utils::Vector3d const &pos2, Utils::Vector3d &p1f_asym, Utils::Vector3d &p2f_asym, double q1q2) const
Add short-range pair force corrections.
Definition elc.hpp:337
void init()
Recalculate all derived parameters.
Definition elc.hpp:249
double long_range_energy() const
Calculate long-range electrostatic energy with corrections.
Definition elc.cpp:1206
void on_node_grid_change() const
Definition elc.hpp:231
BoxGeometry * m_box_geo
Definition elc.hpp:196
double pair_energy_correction(std::size_t p1, std::size_t p2, auto &aosoa, double q1q2) const
Calculate short-range pair energy correction.
Definition elc.hpp:284
Struct holding all information for one particle.
Definition Particle.hpp:436
Parameters for the ELC method.
Definition elc.hpp:65
double dielectric_layers_self_energy(CoulombP3M const &p3m, BoxGeometry const &box_geo, ParticleRange const &particles) const
self energies of top and bottom layers with their virtual images
Definition elc.hpp:163
double maxPWerror
Maximal allowed pairwise error for the potential and force.
Definition elc.hpp:74
double pot_diff
Constant potential difference.
Definition elc.hpp:113
double box_h
Up to where particles can be found.
Definition elc.hpp:80
void dielectric_layers_contribution(BoxGeometry const &box_geo, std::size_t p1, std::size_t p2, auto &aosoa, double q1q2, auto &&kernel) const
pairwise contributions from lower and upper layers
Definition elc.hpp:121
bool dielectric_contrast_on
Flag whether there is any dielectric contrast in the system.
Definition elc.hpp:96
double space_box
The space that is finally left.
Definition elc.hpp:118
void dielectric_layers_contribution(BoxGeometry const &box_geo, Utils::Vector3d const &pos1, Utils::Vector3d const &pos2, double q1q2, auto &&kernel) const
pairwise contributions from lower and upper layers
Definition elc.hpp:145
bool neutralize
Flag whether the box is neutralized by a homogeneous background.
Definition elc.hpp:106
double far_cut
Cutoff of the exponential sum.
Definition elc.hpp:86
double space_layer
Layer around the dielectric contrast in which we trick around.
Definition elc.hpp:116
bool far_calculated
Flag whether far_cut was set by the user, or calculated by ESPResSo.
Definition elc.hpp:93
double gap_size
Size of the empty gap.
Definition elc.hpp:78
double delta_mid_bot
dielectric contrast in the lower part of the simulation cell.
Definition elc.hpp:111
void dielectric_layers_self_forces(CoulombP3M const &p3m, BoxGeometry const &box_geo, ParticleRange const &particles) const
forces of particles in border layers with themselves
Definition elc.hpp:178
bool const_pot
Flag whether a constant potential difference is applied.
Definition elc.hpp:98
double far_cut2
Squared value of far_cut.
Definition elc.hpp:88
double delta_mid_top
dielectric contrast in the upper part of the simulation cell.
Definition elc.hpp:109
Whether an actor is a layer correction method.
Definition traits.hpp:26