58#include "communication.hpp"
66#include "system/System.hpp"
75#include <boost/mpi/collectives/all_reduce.hpp>
76#include <boost/mpi/collectives/broadcast.hpp>
77#include <boost/mpi/collectives/reduce.hpp>
78#include <boost/mpi/communicator.hpp>
79#include <boost/range/combine.hpp>
80#include <boost/range/numeric.hpp>
82#include <Kokkos_Core.hpp>
83#include <Kokkos_ScatterView.hpp>
91#include <initializer_list>
103template <
typename FloatType>
104std::complex<FloatType>
107 return std::complex<FloatType>(-z.imag() * k, z.real() * k);
110template <
typename FloatType>
111std::complex<FloatType>
114 return std::complex<FloatType>(z.real() * k, z.imag() * k);
119 return mesh[0
u] % node_grid[0
u] == 0
and mesh[1u] % node_grid[1u] == 0
and
120 mesh[2u] % node_grid[2u] == 0;
123template <
typename FloatType, Arch Architecture,
class FFTConfig>
127 std::size_t
local_n = std::size_t{0
u};
131 auto kernel = [](
Res &acc,
auto const &p) {
135 acc.local_q += p.q();
139 auto reduce = [](
Res &a,
Res const &b) {
140 a.local_n += b.local_n;
141 a.local_q += b.local_q;
142 a.local_q2 += b.local_q2;
147 boost::mpi::all_reduce(
comm_cart,
res.local_n, p3m.sum_qpart, std::plus<>());
148 boost::mpi::all_reduce(
comm_cart,
res.local_q2, p3m.sum_q2, std::plus<>());
149 boost::mpi::all_reduce(
comm_cart,
res.local_q, p3m.square_sum_q,
151 p3m.square_sum_q =
Utils::sqr(p3m.square_sum_q);
163template <
typename FloatType, Arch Architecture,
class FFTConfig>
167 FFTConfig::k_space_order>(
168 p3m.params, p3m.fft->ks_local_ld_index(), p3m.fft->ks_local_ur_index(),
169 get_system().
box_geo->length_inv());
170 if constexpr (FFTConfig::use_r2c) {
172 p3m.fft->ks_local_size(),
173 p3m.fft->ks_local_ld_index());
180template <
typename FloatType, Arch Architecture,
class FFTConfig>
184 FFTConfig::k_space_order>(
185 p3m.params, p3m.fft->ks_local_ld_index(), p3m.fft->ks_local_ur_index(),
186 get_system().
box_geo->length_inv());
187 if constexpr (FFTConfig::use_r2c) {
189 p3m.fft->ks_local_size(),
190 p3m.fft->ks_local_ld_index());
202 auto constexpr exp_min = -708.4;
221 [&](
unsigned dim,
int n) {
222 nm[dim] = shift[dim] + n * mesh[dim];
240 std::size_t
n_c_part,
double sum_q2,
244 return (2. * pref * sum_q2 *
exp(-
Utils::sqr(r_cut_iL * alpha_L))) /
245 sqrt(
static_cast<double>(
n_c_part) * r_cut_iL *
box_l[0] * volume);
262 int cao, std::size_t
n_c_part,
double sum_q2,
294 return 2. * pref * sum_q2 * sqrt(
he_q /
static_cast<double>(
n_c_part)) /
298template <
typename FloatType, Arch Architecture,
class FFTConfig>
302 assert(p3m.params.alpha > 0.);
304 auto const &
system = get_system();
305 auto const &box_geo = *
system.box_geo;
306 auto const &local_geo = *
system.local_geo;
307 auto const skin =
system.cell_structure->get_verlet_skin();
309 p3m.params.cao3 = Utils::int_pow<3>(p3m.params.cao);
310 p3m.params.recalc_a_ai_cao_cut(box_geo.length());
314 auto const &solver =
system.coulomb.impl->solver;
320 p3m.local_mesh.calc_local_ca_mesh(p3m.params, local_geo,
skin,
elc_layer);
321 std::shared_ptr<P3MFFTBackend<FloatType, FFTConfig>>
fft_backend;
328 std::is_same_v<FFTConfig, P3MFFTKokkosConfig>) {
330 ::comm_cart, p3m.params.mesh, p3m.local_mesh.ld_no_halo,
334 fft_backend = std::make_shared<P3MFFTHeffte<FloatType, FFTConfig>>(
335 ::comm_cart, p3m.params.mesh, p3m.local_mesh.ld_no_halo,
342 static_cast<std::size_t
>(
Utils::product(p3m.local_mesh.dim_no_halo));
344 static_cast<std::size_t
>(
Utils::product(p3m.fft->ks_local_size()));
347 for (
auto d : {0
u, 1u, 2u}) {
352 p3m.calc_differential_operator();
357 count_charged_particles();
366 p3m_interpolate(p3m.local_mesh, weights, [q, &p3m](
int ind,
double w) {
367 p3m.rs_charge_density[ind] += value_type(w * q);
375 real_pos.as_span(), p3m.params.ai, p3m.local_mesh);
376 inter_weights.
store(weights);
377 this->operator()(p3m, q, weights);
383 real_pos.as_span(), p3m.params.ai, p3m.local_mesh);
384 this->operator()(p3m, q, weights);
390 using execution_space = Kokkos::DefaultHostExecutionSpace;
391 auto const &aosoa = cell_structure.get_aosoa();
392 auto const n_part = cell_structure.count_local_particles();
395 "InterpolateCharges", std::size_t{0
u}, n_part, [&](
auto p_index) {
398 auto const pos = aosoa.get_span_at(aosoa.position,
p_index);
399 auto const q = aosoa.charge(
p_index);
402 pos, p3m.params.ai, p3m.local_mesh);
403 p3m.inter_weights.store_at(
p_index, weights);
405 p3m.local_mesh, weights, [&,
tid, q](
int ind,
double w) {
406 p3m.rs_charge_density_kokkos(tid, ind) += value_type(w * q);
412 "ReduceInterpolatedCharges", std::size_t{0}, p3m.local_mesh.size,
416 acc += p3m.rs_charge_density_kokkos(
tid, i);
418 p3m.rs_charge_density.at(i) += acc;
425template <
typename FloatType, Arch Architecture,
class FFTConfig>
427 prepare_fft_mesh(
true);
429 Utils::integral_parameter<int, AssignCharge, p3m_min_cao, p3m_max_cao>(
430 p3m.params.cao, p3m, *get_system().cell_structure);
433template <
typename FloatType, Arch Architecture,
class FFTConfig>
437 Utils::integral_parameter<int, AssignCharge, p3m_min_cao, p3m_max_cao>(
440 Utils::integral_parameter<int, AssignCharge, p3m_min_cao, p3m_max_cao>(
441 p3m.params.cao, p3m, q,
real_pos, p3m.inter_weights);
450 assert(cao == p3m.inter_weights.cao());
451 using execution_space = Kokkos::DefaultHostExecutionSpace;
453 auto const kernel = [&p3m](
auto pref,
auto &
p_force, std::size_t
p_index) {
458 [&force, &p3m](
int ind,
double w) {
459 force[0u] += w * double(p3m.rs_E_fields[0u][ind]);
460 force[1u] += w * double(p3m.rs_E_fields[1u][ind]);
461 force[2u] += w * double(p3m.rs_E_fields[2u][ind]);
464 auto access =
p_force.access();
465 access(
p_index, 0) -= pref * force[0];
466 access(
p_index, 1) -= pref * force[1];
467 access(
p_index, 2) -= pref * force[2];
471 auto const &aosoa = cell_structure.
get_aosoa();
474 "AssignForces", std::size_t{0
u}, n_part, [&](std::size_t
p_index) {
484 auto const &cs,
auto const &box_geo) {
488 acc += p.
q() * box_geo.unfolded_position(p.
pos(), p.
image_box());
491 return boost::mpi::all_reduce(comm,
local_dip, std::plus<>());
494template <
typename FloatType, Arch Architecture,
class FFTConfig>
498 p3m.halo_comm.gather_grid(
comm_cart, p3m.rs_charge_density.data(),
504 auto *
const fft_input = p3m.fft->forward_input_buffer();
506 fft_input, p3m.rs_charge_density, p3m.local_mesh.dim,
507 p3m.local_mesh.n_halo_ld, p3m.local_mesh.dim - p3m.local_mesh.n_halo_ur);
513 p3m.fft->forward(
fft_input, p3m.ks_charge_density.data());
516template <
typename FloatType, Arch Architecture,
class FFTConfig>
519 auto const mesh_start = p3m.fft->ks_local_ld_index();
520 auto const mesh_stop = p3m.fft->ks_local_ur_index();
531#ifdef ESPRESSO_ADDITIONAL_CHECKS
533 Utils::get_linear_index<FFTConfig::k_space_order>(
539 for (
auto d : {0
u, 1u, 2u}) {
549 auto const size = p3m.local_mesh.ur_no_halo - p3m.local_mesh.ld_no_halo;
551 for (
auto d : {0
u, 1u, 2u}) {
552 auto k_space = p3m.ks_E_fields[d].data();
553 auto r_space = p3m.rs_E_fields_no_halo[d].data();
559 auto const begin = p3m.rs_E_fields_no_halo[d].begin();
560 assert(p3m.rs_E_fields[d].size() ==
565 p3m.local_mesh.dim_no_halo, p3m.local_mesh.n_halo_ld,
566 p3m.local_mesh.n_halo_ur);
570 std::array<FloatType *, 3u> rs_fields = {{p3m.rs_E_fields[0
u].data(),
571 p3m.rs_E_fields[1u].data(),
572 p3m.rs_E_fields[2u].data()}};
573 p3m.halo_comm.spread_grid(
comm_cart, rs_fields, p3m.local_mesh.dim);
581template <
typename FloatType, Arch Architecture,
class FFTConfig>
584 auto const &box_geo = *get_system().
box_geo;
587 if (p3m.sum_q2 > 0.) {
589 kernel_ks_charge_density();
591 auto constexpr r2c_dir = FFTConfig::r2c_dir;
594 auto const local_size = p3m.fft->ks_local_size();
597 auto const wavevector = (2. * std::numbers::pi) * box_geo.length_inv();
603 std::size_t index = 0
u;
616 static_cast<double>(p3m.g_energy[index] *
617 std::norm(p3m.ks_charge_density[index]));
651template <
typename FloatType, Arch Architecture,
class FFTConfig>
655 auto const &
system = get_system();
656 auto const &box_geo = *
system.box_geo;
662 if (p3m.sum_qpart == 0
u) {
665 auto &cell_structure = *
system.cell_structure;
668 system.coulomb.impl->solver)) {
672 kernel_ks_charge_density();
675 auto const &aosoa = cell_structure.get_aosoa();
682 auto const volume = box_geo.volume();
684 4. * std::numbers::pi / volume / (2. * p3m.params.epsilon + 1.);
689 kernel_rs_electric_field();
694 Utils::integral_parameter<int, AssignForces, p3m_min_cao, p3m_max_cao>(
700 using execution_space = Kokkos::DefaultHostExecutionSpace;
702 auto const n_part = cell_structure.count_local_particles();
704 "AssignForcesBoxDipole", std::size_t{0
u}, n_part,
707 auto const q = aosoa.charge(
p_index);
717 auto constexpr r2c_dir = FFTConfig::r2c_dir;
720 auto const local_size = p3m.fft->ks_local_size();
727 std::size_t index = 0
u;
731 auto const &
cell_field = p3m.ks_charge_density[index];
732 auto cell_energy =
static_cast<double>(p3m.g_energy[index] *
750 energy -= p3m.sum_q2 * p3m.params.alpha * std::numbers::inv_sqrtpi;
753 energy -= p3m.square_sum_q * std::numbers::pi /
775template <
typename FloatType, Arch Architecture,
class FFTConfig>
780 double m_mesh_density_min = -1., m_mesh_density_max = -1.;
782 bool m_tune_mesh =
false;
783 std::pair<std::optional<int>, std::optional<int>> m_tune_limits;
798 double prefactor,
int timings,
810 auto const on_gpu =
false;
812 m_logger = std::make_unique<TuningLogger>(
820 std::optional<std::string>
824 return actor->veto_r_cut(r_cut);
843 return Utils::Vector3i{{std::max(lhs[0u], rhs[0u]),
844 std::max(lhs[1u], rhs[1u]),
845 std::max(lhs[2u], rhs[2u])}};
848 if constexpr (FFTConfig::use_r2c) {
863 std::optional<std::string>
retval{
"conflict with FFT domain decomposition"};
870 std::tuple<double, double, double, double>
872 double r_cut_iL)
const override {
874 auto const &box_geo = *m_system.box_geo;
879 p3m.
sum_q2, 0., box_geo.length());
894 p3m.
sum_q2, alpha_L, box_geo.length());
900 p3m.
sum_q2, alpha_L, box_geo.length().data());
906 p3m.
sum_q2, alpha_L, box_geo.length());
912 auto const &box_geo = *m_system.box_geo;
914 static_cast<double>(p3m.
params.
mesh[0]) * box_geo.length_inv()[0];
927 if (m_tune_limits.first
or m_tune_limits.second) {
928 auto const &
box_l = box_geo.length();
930 if (m_tune_limits.first) {
931 m_mesh_density_min =
static_cast<double>(*m_tune_limits.first) / dim;
933 if (m_tune_limits.second) {
934 m_mesh_density_max =
static_cast<double>(*m_tune_limits.second) / dim;
943 for (
auto i : {1u, 2u}) {
945 static_cast<int>(std::round(
mesh_density * box_geo.length()[i]));
955 auto const &box_geo = *m_system.box_geo;
956 auto const &solver = m_system.coulomb.impl->solver;
962 for (
auto i : {0
u, 1u, 2u}) {
964 static_cast<int>(std::round(box_geo.length()[i] *
mesh_density));
993 get_n_trials() > max_n_consecutive_trials) {
1009template <
typename FloatType, Arch Architecture,
class FFTConfig>
1011 auto &
system = get_system();
1012 auto const &box_geo = *
system.box_geo;
1019 if (
not is_tuned()) {
1020 count_charged_particles();
1022 throw std::runtime_error(
1023 "CoulombP3M: no charged particles in the system");
1027 system, p3m, prefactor, tuning.timings, tuning.limits);
1036 system.on_coulomb_change();
1047 auto const &box_geo = *
system.box_geo;
1048 auto const &local_geo = *
system.local_geo;
1049 for (
auto i = 0
u; i < 3u; i++) {
1052 std::stringstream
msg;
1054 <<
" is larger than half of box dimension " << box_geo.length()[i];
1055 throw std::runtime_error(
msg.str());
1058 std::stringstream
msg;
1060 <<
" is larger than local box dimension " << local_geo.length()[i];
1061 throw std::runtime_error(
msg.str());
1066 if ((box_geo.length()[0] != box_geo.length()[1])
or
1067 (box_geo.length()[1] != box_geo.length()[2])
or
1070 throw std::runtime_error(
1071 "CoulombP3M: non-metallic epsilon requires cubic box");
1078 if (!box_geo.periodic(0)
or !box_geo.periodic(1)
or !box_geo.periodic(2)) {
1079 throw std::runtime_error(
1080 "CoulombP3M: requires periodicity (True, True, True)");
1085 auto const &local_geo = *
get_system().local_geo;
1088 throw std::runtime_error(
1089 "CoulombP3M: requires the regular or hybrid decomposition cell system");
1093 throw std::runtime_error(
1094 "CoulombP3M: does not work with the hybrid decomposition cell system, "
1095 "if using more than one MPI node");
1099template <
typename FloatType, Arch Architecture,
class FFTConfig>
1101 auto const &box_geo = *get_system().
box_geo;
1106 sanity_checks_boxl();
1107 calc_influence_function_force();
1108 calc_influence_function_energy();
1113template <
typename FloatType, Arch Architecture,
class FFTConfig>
1123 auto &gpu = *get_system().
gpu;
1135template <
typename FloatType, Arch Architecture,
class FFTConfig>
1138 auto &
system = get_system();
1140 system.coulomb.impl->solver)) {
1148template <
typename FloatType, Arch Architecture,
class FFTConfig>
@ HYBRID
Hybrid decomposition.
@ REGULAR
Regular decomposition.
Vector implementation and trait types for boost qvm interoperability.
Describes a cell structure / cell system.
std::size_t count_local_particles() const
void determine_mesh_limits() override
std::optional< std::string > layer_correction_veto_r_cut(double r_cut) const override
TuningAlgorithm::Parameters get_time() override
void setup_logger(bool verbose) override
std::tuple< double, double, double, double > calculate_accuracy(Utils::Vector3i const &mesh, int cao, double r_cut_iL) const override
void on_solver_change() const override
CoulombTuningAlgorithm(System::System &system, auto &input_p3m, double prefactor, int timings, decltype(m_tune_limits) tune_limits)
static constexpr std::tuple< int, int, int > get_memory_layout()
std::optional< std::string > fft_decomposition_veto(Utils::Vector3i const &mesh_size_r_space) const override
P3MParameters & get_params() override
void npt_add_virial_contribution(double energy)
std::shared_ptr< GpuParticleData > gpu
bool has_npt_enabled() const
std::shared_ptr< BoxGeometry > box_geo
Tuning algorithm for P3M.
System::System & m_system
std::unique_ptr< TuningLogger > m_logger
DEVICE_QUALIFIER constexpr pointer data() noexcept
static DEVICE_QUALIFIER constexpr Vector< T, N > broadcast(typename Base::value_type const &value) noexcept
Create a vector that has all entries set to the same value.
Cache for interpolation weights.
void zfill(std::size_t size)
Fill cache with zero-initialized data.
void store(InterpolationWeights< cao > const &weights)
Push back weights for one point.
cudaStream_t stream[1]
CUDA streams for parallel computing on CPU and GPU.
Communicator communicator
boost::mpi::communicator comm_cart
The communicator.
int this_node
The number of this node.
constexpr auto round_error_prec
Precision below which a double-precision float is assumed to be zero.
void charge_assign(elc_data const &elc, CoulombP3M &solver, auto const &cs)
ELC algorithm for long-range Coulomb interactions.
This file contains the errorhandling code for severe errors, like a broken bond or illegal parameter ...
void pad_with_zeros_discard_imag_into(OutValue *out, std::span< T > cropped_array, Utils::Vector3i const &cropped_dim, Utils::Vector3i const &pad_left, Utils::Vector3i const &pad_right)
Pad a 3D matrix with zeros to restore halo regions, writing into a caller-provided buffer of product(...
and std::invocable< Projector, unsigned, int > void for_each_3d(detail::IndexVectorConcept auto &&start, detail::IndexVectorConcept auto &&stop, detail::IndexVectorConcept auto &&counters, Kernel &&kernel, Projector &&projector=detail::noop_projector)
Repeat an operation on every element of a 3D grid.
std::vector< FloatType > grid_influence_function(P3MParameters const ¶ms, Utils::Vector3i const &n_start, Utils::Vector3i const &n_stop, Utils::Vector3d const &inv_box_l)
Map influence function over a grid.
void p3m_interpolate(P3MLocalMesh const &local_mesh, WeightsStorage< cao > const &weights, Kernel kernel)
P3M grid interpolation.
constexpr int p3m_min_cao
Minimal charge assignment order.
constexpr int p3m_max_cao
Maximal charge assignment order.
#define P3M_BRILLOUIN
P3M: Number of Brillouin zones taken into account in the calculation of the optimal influence functio...
T product(Vector< T, N > const &v)
DEVICE_QUALIFIER constexpr T sqr(T x)
Calculates the SQuaRe of x.
DEVICE_QUALIFIER auto sinc(T x)
Calculate the function .
auto get_analytic_cotangent_sum_kernel(int cao)
Exports for the NpT code.
auto constexpr P3M_EPSILON_METALLIC
This value indicates metallic boundary conditions.
P3M algorithm for long-range Coulomb interaction.
double p3m_k_space_error(double pref, Utils::Vector3i const &mesh, int cao, std::size_t n_c_part, double sum_q2, double alpha_L, Utils::Vector3d const &box_l)
Calculate the analytic expression of the error estimate for the P3M method in (eq.
std::complex< FloatType > multiply_complex_by_real(std::complex< FloatType > const &z, FloatType k)
auto p3m_tune_aliasing_sums(Utils::Vector3i const &shift, Utils::Vector3i const &mesh, Utils::Vector3d const &mesh_i, int cao, double alpha_L_i)
Aliasing sum used by p3m_k_space_error.
double p3m_real_space_error(double pref, double r_cut_iL, std::size_t n_c_part, double sum_q2, double alpha_L, Utils::Vector3d const &box_l)
Calculate the real space contribution to the rms error in the force (as described by Kolafa and Perra...
std::complex< FloatType > multiply_complex_by_imaginary(std::complex< FloatType > const &z, FloatType k)
auto calc_dipole_moment(boost::mpi::communicator const &comm, auto const &cs, auto const &box_geo)
bool is_node_grid_compatible_with_mesh(Utils::Vector3i const &node_grid, Utils::Vector3i const &mesh)
void p3m_gpu_add_farfield_force(P3MGpuParams &data, GpuParticleData &gpu, double prefactor, std::size_t n_part)
The long-range part of the P3M algorithm.
void p3m_gpu_init(std::shared_ptr< P3MGpuParams > &data, int cao, Utils::Vector3i const &mesh, double alpha, Utils::Vector3d const &box_l, std::size_t n_part)
Initialize the internal data structure of the P3M GPU.
P3M electrostatics on GPU.
double p3m_k_space_error_gpu(double prefactor, const int *mesh, int cao, int npart, double sum_q2, double alpha_L, const double *box)
Utils::Vector3i node_grid
void charge_assign() override
double long_range_kernel(bool force_flag, bool energy_flag)
Compute the k-space part of forces and energies.
Utils::Vector9d long_range_pressure() override
void scaleby_box_l() override
void assign_charge(double q, Utils::Vector3d const &real_pos, bool skip_cache) override
Base class for the electrostatics P3M algorithm.
std::shared_ptr< P3MFFTBackend< FloatType, FFTConfig > > fft
p3m_interpolation_cache inter_weights
std::size_t sum_qpart
number of charged particles.
p3m_send_mesh< FloatType > halo_comm
double sum_q2
Sum of square of charges.
void sanity_checks_periodicity() const
void sanity_checks_boxl() const
Checks for correctness of the k-space cutoff.
void sanity_checks_cell_structure() const
P3MParameters const & p3m_params
std::unique_ptr< Implementation > impl
Pointer-to-implementation.
static constexpr std::size_t force
static constexpr std::size_t pos
static constexpr std::size_t q
Interpolation weights for one point.
void recalc_ld_pos(P3MParameters const ¶ms)
Recalculate quantities derived from the mesh and box length: ld_pos (position of the left down mesh).
Structure to hold P3M parameters and some dependent variables.
Utils::Vector3d cao_cut
cutoff for charge assignment.
double alpha
unscaled alpha_L for use with fast inline functions only
double r_cut_iL
cutoff radius for real space electrostatics (>0), rescaled to r_cut_iL = r_cut * box_l_i.
int cao
charge assignment order ([0,7]).
double accuracy
accuracy of the actual parameter set.
double alpha_L
Ewald splitting parameter (0.
double r_cut
unscaled r_cut_iL for use with fast inline functions only
void recalc_a_ai_cao_cut(Utils::Vector3d const &box_l)
Recalculate quantities derived from the mesh and box length: a, ai and cao_cut.
bool tuning
tuning or production?
Utils::Vector3i mesh
number of mesh points per coordinate direction (>0), in real space.
double epsilon
epsilon of the "surrounding dielectric".
P3MLocalMesh local_mesh
Local mesh geometry information for this MPI rank.
P3MParameters params
P3M base parameters.
Struct holding all information for one particle.
constexpr auto const & pos() const
constexpr auto const & image_box() const
constexpr auto const & q() const
void operator()(auto &p3m, double q, Utils::Vector3d const &real_pos, p3m_interpolation_cache &inter_weights)
void operator()(auto &p3m, auto &cell_structure)
void operator()(auto &p3m, double q, Utils::Vector3d const &real_pos)
void operator()(auto &p3m, double q, InterpolationWeights< cao > const &weights)
void operator()(auto &p3m, auto force_prefac, CellStructure &cell_structure) const