ESPResSo
Extensible Simulation Package for Research on Soft Matter Systems
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p3m.impl.definitions.hpp
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1/*
2 * Copyright (C) 2010-2026 The ESPResSo project
3 * Copyright (C) 2002,2003,2004,2005,2006,2007,2008,2009,2010
4 * Max-Planck-Institute for Polymer Research, Theory Group
5 *
6 * This file is part of ESPResSo.
7 *
8 * ESPResSo is free software: you can redistribute it and/or modify
9 * it under the terms of the GNU General Public License as published by
10 * the Free Software Foundation, either version 3 of the License, or
11 * (at your option) any later version.
12 *
13 * ESPResSo is distributed in the hope that it will be useful,
14 * but WITHOUT ANY WARRANTY; without even the implied warranty of
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
16 * GNU General Public License for more details.
17 *
18 * You should have received a copy of the GNU General Public License
19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
20 */
21
22#include <config/config.hpp>
23
24#ifdef ESPRESSO_P3M
25
28
31#ifdef ESPRESSO_CUDA
34#endif // ESPRESSO_CUDA
36
37#include "electrostatics/p3m.impl.hpp" // must be included after coulomb.hpp
38
39#include "p3m/P3MFFT.hpp"
42#include "p3m/TuningLogger.hpp"
44#include "p3m/for_each_3d.hpp"
46#include "p3m/math.hpp"
47
48#include "BoxGeometry.hpp"
49#include "LocalBox.hpp"
50#include "Particle.hpp"
52#include "PropagationMode.hpp"
53#include "actor/visitors.hpp"
54#include "aosoa_pack.hpp"
58#include "communication.hpp"
59#include "errorhandling.hpp"
61#include "kokkos_helpers.hpp"
62#include "npt.hpp"
63#include "p3m/send_mesh.hpp"
66#include "system/System.hpp"
67#include "tuning.hpp"
68
69#include <utils/Vector.hpp>
72#include <utils/math/sqr.hpp>
74
75#include <boost/mpi/collectives/all_reduce.hpp>
76#include <boost/mpi/collectives/broadcast.hpp>
77#include <boost/mpi/collectives/reduce.hpp>
78#include <boost/mpi/communicator.hpp>
79#include <boost/range/combine.hpp>
80#include <boost/range/numeric.hpp>
81
82#include <Kokkos_Core.hpp>
83#include <Kokkos_ScatterView.hpp>
84
85#include <algorithm>
86#include <array>
87#include <cassert>
88#include <complex>
89#include <cstddef>
90#include <functional>
91#include <initializer_list>
92#include <numbers>
93#include <optional>
94#include <span>
95#include <sstream>
96#include <stdexcept>
97#include <string>
98#include <tuple>
99#include <type_traits>
100#include <utility>
101#include <vector>
102
103template <typename FloatType>
104std::complex<FloatType>
105multiply_complex_by_imaginary(std::complex<FloatType> const &z, FloatType k) {
106 // Perform the multiplication manually: (re + i*imag) * (i*k)
107 return std::complex<FloatType>(-z.imag() * k, z.real() * k);
108}
109
110template <typename FloatType>
111std::complex<FloatType>
112multiply_complex_by_real(std::complex<FloatType> const &z, FloatType k) {
113 // Perform the multiplication manually: (re + i*imag) * k
114 return std::complex<FloatType>(z.real() * k, z.imag() * k);
115}
116
118 Utils::Vector3i const &mesh) {
119 return mesh[0u] % node_grid[0u] == 0 and mesh[1u] % node_grid[1u] == 0 and
120 mesh[2u] % node_grid[2u] == 0;
121}
122
123template <typename FloatType, Arch Architecture, class FFTConfig>
124void CoulombP3MImpl<FloatType, Architecture,
125 FFTConfig>::count_charged_particles() {
126 struct Res {
127 std::size_t local_n = std::size_t{0u};
128 double local_q = 0.0;
129 double local_q2 = 0.0;
130 };
131 auto kernel = [](Res &acc, auto const &p) {
132 if (p.q() != 0.0) {
133 acc.local_n++;
134 acc.local_q2 += Utils::sqr(p.q());
135 acc.local_q += p.q();
136 }
137 };
138
139 auto reduce = [](Res &a, Res const &b) {
140 a.local_n += b.local_n;
141 a.local_q += b.local_q;
142 a.local_q2 += b.local_q2;
143 };
144 auto res = reduce_over_local_particles<Res>(*(get_system().cell_structure),
145 kernel, reduce);
146
147 boost::mpi::all_reduce(comm_cart, res.local_n, p3m.sum_qpart, std::plus<>());
148 boost::mpi::all_reduce(comm_cart, res.local_q2, p3m.sum_q2, std::plus<>());
149 boost::mpi::all_reduce(comm_cart, res.local_q, p3m.square_sum_q,
150 std::plus<>());
151 p3m.square_sum_q = Utils::sqr(p3m.square_sum_q);
152}
153
154/** Calculate the optimal influence function of @cite hockney88a.
155 * (optimised for force calculations)
156 *
157 * Each node calculates only the values for its domain in k-space.
158 *
159 * See also: @cite hockney88a eq. 8-22 (p. 275). Note the somewhat
160 * different convention for the prefactors, which is described in
161 * @cite deserno98a @cite deserno98b.
162 */
163template <typename FloatType, Arch Architecture, class FFTConfig>
164void CoulombP3MImpl<FloatType, Architecture,
165 FFTConfig>::calc_influence_function_force() {
166 p3m.g_force = grid_influence_function<FloatType, 1, P3M_BRILLOUIN,
167 FFTConfig::k_space_order>(
168 p3m.params, p3m.fft->ks_local_ld_index(), p3m.fft->ks_local_ur_index(),
169 get_system().box_geo->length_inv());
170 if constexpr (FFTConfig::use_r2c) {
171 influence_function_r2c<FFTConfig::r2c_dir>(p3m.g_force, p3m.params.mesh,
172 p3m.fft->ks_local_size(),
173 p3m.fft->ks_local_ld_index());
174 }
175}
176
177/** Calculate the influence function optimized for the energy and the
178 * self energy correction.
179 */
180template <typename FloatType, Arch Architecture, class FFTConfig>
181void CoulombP3MImpl<FloatType, Architecture,
182 FFTConfig>::calc_influence_function_energy() {
183 p3m.g_energy = grid_influence_function<FloatType, 0, P3M_BRILLOUIN,
184 FFTConfig::k_space_order>(
185 p3m.params, p3m.fft->ks_local_ld_index(), p3m.fft->ks_local_ur_index(),
186 get_system().box_geo->length_inv());
187 if constexpr (FFTConfig::use_r2c) {
188 influence_function_r2c<FFTConfig::r2c_dir>(p3m.g_energy, p3m.params.mesh,
189 p3m.fft->ks_local_size(),
190 p3m.fft->ks_local_ld_index());
191 }
192}
193
194/** Aliasing sum used by @ref p3m_k_space_error. */
196 Utils::Vector3i const &mesh,
197 Utils::Vector3d const &mesh_i, int cao,
198 double alpha_L_i) {
199
202 auto constexpr exp_min = -708.4; // for IEEE-compatible double
203 auto const factor1 = Utils::sqr(std::numbers::pi * alpha_L_i);
204 auto alias1 = 0.;
205 auto alias2 = 0.;
206
212 [&]() {
213 auto const norm_sq = nm.norm2();
214 auto const exponent = -factor1 * norm_sq;
215 auto const exp_limit = (exp_min + std::log(norm_sq)) / 2.;
216 auto const ex = (exponent < exp_limit) ? 0. : std::exp(exponent);
217 auto const energy = std::pow(Utils::product(fnm), 2 * cao);
219 alias2 += energy * ex * (shift * nm) / norm_sq;
220 },
221 [&](unsigned dim, int n) {
222 nm[dim] = shift[dim] + n * mesh[dim];
223 fnm[dim] = math::sinc(nm[dim] * mesh_i[dim]);
224 });
225
226 return std::make_pair(alias1, alias2);
227}
228
229/** Calculate the real space contribution to the rms error in the force (as
230 * described by Kolafa and Perram).
231 * \param pref Prefactor of Coulomb interaction.
232 * \param r_cut_iL rescaled real space cutoff for p3m method.
233 * \param n_c_part number of charged particles in the system.
234 * \param sum_q2 sum of square of charges in the system
235 * \param alpha_L rescaled Ewald splitting parameter.
236 * \param box_l box dimensions.
237 * \return real space error
238 */
239inline double p3m_real_space_error(double pref, double r_cut_iL,
240 std::size_t n_c_part, double sum_q2,
241 double alpha_L,
242 Utils::Vector3d const &box_l) {
243 auto const volume = Utils::product(box_l);
244 return (2. * pref * sum_q2 * exp(-Utils::sqr(r_cut_iL * alpha_L))) /
245 sqrt(static_cast<double>(n_c_part) * r_cut_iL * box_l[0] * volume);
246}
247
248/** Calculate the analytic expression of the error estimate for the
249 * P3M method in @cite hockney88a (eq. 8-23 p. 275) in
250 * order to obtain the rms error in the force for a system of N
251 * randomly distributed particles in a cubic box (k-space part).
252 * \param pref Prefactor of Coulomb interaction.
253 * \param mesh number of mesh points in one direction.
254 * \param cao charge assignment order.
255 * \param n_c_part number of charged particles in the system.
256 * \param sum_q2 sum of square of charges in the system
257 * \param alpha_L rescaled Ewald splitting parameter.
258 * \param box_l box dimensions.
259 * \return reciprocal (k) space error
260 */
261inline double p3m_k_space_error(double pref, Utils::Vector3i const &mesh,
262 int cao, std::size_t n_c_part, double sum_q2,
263 double alpha_L, Utils::Vector3d const &box_l) {
264
266 auto const mesh_i = 1. / Utils::Vector3d(mesh);
267 auto const alpha_L_i = 1. / alpha_L;
268 auto const mesh_stop = mesh / 2;
269 auto const mesh_start = -mesh_stop;
270 auto indices = Utils::Vector3i{};
271 auto values = Utils::Vector3d{};
272 auto he_q = 0.;
273
276 [&]() {
277 if ((indices[0] != 0) or (indices[1] != 0) or (indices[2] != 0)) {
278 auto const n2 = indices.norm2();
279 auto const cs = Utils::product(values);
280 auto const [alias1, alias2] =
282 auto const d = alias1 - Utils::sqr(alias2 / cs) / n2;
283 /* at high precision, d can become negative due to extinction;
284 also, don't take values that have no significant digits left*/
285 if (d > 0. and std::fabs(d / alias1) > round_error_prec) {
286 he_q += d;
287 }
288 }
289 },
290 [&values, &mesh_i, cotangent_sum](unsigned dim, int n) {
291 values[dim] = cotangent_sum(n, mesh_i[dim]);
292 });
293
294 return 2. * pref * sum_q2 * sqrt(he_q / static_cast<double>(n_c_part)) /
295 (box_l[1] * box_l[2]);
296}
297
298template <typename FloatType, Arch Architecture, class FFTConfig>
300 assert(p3m.params.mesh >= Utils::Vector3i::broadcast(1));
301 assert(p3m.params.cao >= p3m_min_cao and p3m.params.cao <= p3m_max_cao);
302 assert(p3m.params.alpha > 0.);
303
304 auto const &system = get_system();
305 auto const &box_geo = *system.box_geo;
306 auto const &local_geo = *system.local_geo;
307 auto const skin = system.cell_structure->get_verlet_skin();
308
309 p3m.params.cao3 = Utils::int_pow<3>(p3m.params.cao);
310 p3m.params.recalc_a_ai_cao_cut(box_geo.length());
311
312 sanity_checks();
313
314 auto const &solver = system.coulomb.impl->solver;
315 double elc_layer = 0.;
316 if (auto actor = get_actor_by_type<ElectrostaticLayerCorrection>(solver)) {
317 elc_layer = actor->elc.space_layer;
318 }
319
320 p3m.local_mesh.calc_local_ca_mesh(p3m.params, local_geo, skin, elc_layer);
321 std::shared_ptr<P3MFFTBackend<FloatType, FFTConfig>> fft_backend;
322 // The kokkos-fft backend serves only the row-major r2c config on the CPU;
323 // the factory additionally requires kokkos-fft support to be compiled in
324 // and a single MPI rank, and returns nullptr otherwise. The factory is
325 // defined once inside the espresso_p3m target, so backend selection is
326 // identical in every translation unit that instantiates this solver.
327 if constexpr (Architecture == Arch::CPU and
328 std::is_same_v<FFTConfig, P3MFFTKokkosConfig>) {
330 ::comm_cart, p3m.params.mesh, p3m.local_mesh.ld_no_halo,
331 p3m.local_mesh.ur_no_halo, ::communicator.node_grid);
332 }
333 if (not fft_backend) {
334 fft_backend = std::make_shared<P3MFFTHeffte<FloatType, FFTConfig>>(
335 ::comm_cart, p3m.params.mesh, p3m.local_mesh.ld_no_halo,
336 p3m.local_mesh.ur_no_halo, ::communicator.node_grid);
337 }
338 p3m.fft = std::move(fft_backend);
339 auto const rs_array_size =
340 static_cast<std::size_t>(Utils::product(p3m.local_mesh.dim));
341 auto const rs_array_size_no_halo =
342 static_cast<std::size_t>(Utils::product(p3m.local_mesh.dim_no_halo));
343 auto const fft_mesh_size =
344 static_cast<std::size_t>(Utils::product(p3m.fft->ks_local_size()));
345 p3m.rs_charge_density.resize(rs_array_size);
346 p3m.ks_charge_density.resize(fft_mesh_size);
347 for (auto d : {0u, 1u, 2u}) {
348 p3m.ks_E_fields[d].resize(fft_mesh_size);
349 p3m.rs_E_fields[d].resize(rs_array_size);
350 p3m.rs_E_fields_no_halo[d].resize(rs_array_size_no_halo);
351 }
352 p3m.calc_differential_operator();
353
354 /* fix box length dependent constants */
355 scaleby_box_l();
356
357 count_charged_particles();
358}
359
360namespace {
361template <int cao> struct AssignCharge {
362 void operator()(auto &p3m, double q,
363 InterpolationWeights<cao> const &weights) {
364 using CoulombP3MState = std::remove_reference_t<decltype(p3m)>;
365 using value_type = CoulombP3MState::value_type;
366 p3m_interpolate(p3m.local_mesh, weights, [q, &p3m](int ind, double w) {
367 p3m.rs_charge_density[ind] += value_type(w * q);
368 });
369 }
370
371 void operator()(auto &p3m, double q, Utils::Vector3d const &real_pos,
372 p3m_interpolation_cache &inter_weights) {
375 real_pos.as_span(), p3m.params.ai, p3m.local_mesh);
376 inter_weights.store(weights);
377 this->operator()(p3m, q, weights);
378 }
379
380 void operator()(auto &p3m, double q, Utils::Vector3d const &real_pos) {
383 real_pos.as_span(), p3m.params.ai, p3m.local_mesh);
384 this->operator()(p3m, q, weights);
385 }
386
387 void operator()(auto &p3m, auto &cell_structure) {
388 using CoulombP3MState = std::remove_reference_t<decltype(p3m)>;
389 using value_type = CoulombP3MState::value_type;
390 using execution_space = Kokkos::DefaultHostExecutionSpace;
391 auto const &aosoa = cell_structure.get_aosoa();
392 auto const n_part = cell_structure.count_local_particles();
393 p3m.inter_weights.zfill(n_part); // allocate buffer for parallel write
395 "InterpolateCharges", std::size_t{0u}, n_part, [&](auto p_index) {
397 auto const tid = omp_get_thread_num();
398 auto const pos = aosoa.get_span_at(aosoa.position, p_index);
399 auto const q = aosoa.charge(p_index);
400 auto const weights =
402 pos, p3m.params.ai, p3m.local_mesh);
403 p3m.inter_weights.store_at(p_index, weights);
405 p3m.local_mesh, weights, [&, tid, q](int ind, double w) {
406 p3m.rs_charge_density_kokkos(tid, ind) += value_type(w * q);
407 });
408 });
409 Kokkos::fence();
410 int num_threads = execution_space().concurrency();
412 "ReduceInterpolatedCharges", std::size_t{0}, p3m.local_mesh.size,
413 [&p3m, num_threads](std::size_t const i) {
414 value_type acc{};
415 for (int tid = 0; tid < num_threads; ++tid) {
416 acc += p3m.rs_charge_density_kokkos(tid, i);
417 }
418 p3m.rs_charge_density.at(i) += acc;
419 });
420 Kokkos::fence();
421 }
422};
423} // namespace
424
425template <typename FloatType, Arch Architecture, class FFTConfig>
427 prepare_fft_mesh(true);
428
429 Utils::integral_parameter<int, AssignCharge, p3m_min_cao, p3m_max_cao>(
430 p3m.params.cao, p3m, *get_system().cell_structure);
431}
432
433template <typename FloatType, Arch Architecture, class FFTConfig>
435 double q, Utils::Vector3d const &real_pos, bool skip_cache) {
436 if (skip_cache) {
437 Utils::integral_parameter<int, AssignCharge, p3m_min_cao, p3m_max_cao>(
438 p3m.params.cao, p3m, q, real_pos);
439 } else {
440 Utils::integral_parameter<int, AssignCharge, p3m_min_cao, p3m_max_cao>(
441 p3m.params.cao, p3m, q, real_pos, p3m.inter_weights);
442 }
443}
444
445namespace {
446template <int cao> struct AssignForces {
447 void operator()(auto &p3m, auto force_prefac,
448 CellStructure &cell_structure) const {
449
450 assert(cao == p3m.inter_weights.cao());
451 using execution_space = Kokkos::DefaultHostExecutionSpace;
452
453 auto const kernel = [&p3m](auto pref, auto &p_force, std::size_t p_index) {
454 auto const weights = p3m.inter_weights.template load<cao>(p_index);
455
456 Utils::Vector3d force{};
457 p3m_interpolate(p3m.local_mesh, weights,
458 [&force, &p3m](int ind, double w) {
459 force[0u] += w * double(p3m.rs_E_fields[0u][ind]);
460 force[1u] += w * double(p3m.rs_E_fields[1u][ind]);
461 force[2u] += w * double(p3m.rs_E_fields[2u][ind]);
462 });
463
464 auto access = p_force.access();
465 access(p_index, 0) -= pref * force[0];
466 access(p_index, 1) -= pref * force[1];
467 access(p_index, 2) -= pref * force[2];
468 };
469
470 auto const n_part = cell_structure.count_local_particles();
471 auto const &aosoa = cell_structure.get_aosoa();
472 auto scatter_force = cell_structure.get_scatter_force();
474 "AssignForces", std::size_t{0u}, n_part, [&](std::size_t p_index) {
475 if (auto const pref = aosoa.charge(p_index) * force_prefac) {
476 kernel(pref, scatter_force, p_index);
477 }
478 });
479 }
480};
481} // namespace
482
483inline auto calc_dipole_moment(boost::mpi::communicator const &comm,
484 auto const &cs, auto const &box_geo) {
486 cs,
487 [&box_geo](Utils::Vector3d &acc, Particle const &p) {
488 acc += p.q() * box_geo.unfolded_position(p.pos(), p.image_box());
489 },
490 [](Utils::Vector3d &a, Utils::Vector3d const &b) { a = a + b; });
491 return boost::mpi::all_reduce(comm, local_dip, std::plus<>());
492}
493
494template <typename FloatType, Arch Architecture, class FFTConfig>
495void CoulombP3MImpl<FloatType, Architecture,
496 FFTConfig>::kernel_ks_charge_density() {
497 // halo communication of real space charge density
498 p3m.halo_comm.gather_grid(comm_cart, p3m.rs_charge_density.data(),
499 p3m.local_mesh.dim);
500
501 // Extract the real-space charge density without ghost layers straight into
502 // the FFT backend's own input buffer, so a backend that can transform in
503 // place (kokkos-fft) does so without an extra copy.
504 auto *const fft_input = p3m.fft->forward_input_buffer();
506 fft_input, p3m.rs_charge_density, p3m.local_mesh.dim,
507 p3m.local_mesh.n_halo_ld, p3m.local_mesh.dim - p3m.local_mesh.n_halo_ur);
508
509 // Set up the FFT using the Heffte library.
510 // This is in global mesh coordinates without any ghost layers
511 // The memory layout has to be specified, so the parts of
512 // the mesh held by each MPI rank are assembled correctly.
513 p3m.fft->forward(fft_input, p3m.ks_charge_density.data());
514}
515
516template <typename FloatType, Arch Architecture, class FFTConfig>
517void CoulombP3MImpl<FloatType, Architecture,
518 FFTConfig>::kernel_rs_electric_field() {
519 auto const mesh_start = p3m.fft->ks_local_ld_index();
520 auto const mesh_stop = p3m.fft->ks_local_ur_index();
521 auto const &box_geo = *get_system().box_geo;
522
523 // i*k differentiation
524 auto const wavevector =
525 Utils::Vector3<FloatType>((2. * std::numbers::pi) * box_geo.length_inv());
526
527 // compute electric field, Eq. (3.49) @cite deserno00b
530 [&](Utils::Vector3i const &indices, int local_index) {
531#ifdef ESPRESSO_ADDITIONAL_CHECKS
533 Utils::get_linear_index<FFTConfig::k_space_order>(
534 indices - mesh_start, p3m.fft->ks_local_size()));
535#endif
537 p3m.ks_charge_density[local_index], p3m.g_force[local_index]);
538
539 for (auto d : {0u, 1u, 2u}) {
540 // wave vector of the current mesh point
541 auto const k = FloatType(p3m.d_op[d][indices[d]]) * wavevector[d];
542 // electric field in k-space
543 p3m.ks_E_fields[d][local_index] =
545 }
546 });
547
548 // back-transform the k-space electric field to real space
549 auto const size = p3m.local_mesh.ur_no_halo - p3m.local_mesh.ld_no_halo;
550 auto const rs_mesh_size_no_halo = Utils::product(size);
551 for (auto d : {0u, 1u, 2u}) {
552 auto k_space = p3m.ks_E_fields[d].data();
553 auto r_space = p3m.rs_E_fields_no_halo[d].data();
554 p3m.fft->backward(k_space, r_space);
555
556 // add zeros around the E-field in real space to make room for ghost
557 // layers, writing straight into the persistent halo-sized buffer (no
558 // per-step allocation, only the halo shells are zeroed)
559 auto const begin = p3m.rs_E_fields_no_halo[d].begin();
560 assert(p3m.rs_E_fields[d].size() ==
561 static_cast<std::size_t>(Utils::product(p3m.local_mesh.dim)));
562 pad_with_zeros_discard_imag_into<FFTConfig::r_space_order,
564 p3m.rs_E_fields[d].data(), std::span(begin, rs_mesh_size_no_halo),
565 p3m.local_mesh.dim_no_halo, p3m.local_mesh.n_halo_ld,
566 p3m.local_mesh.n_halo_ur);
567 }
568
569 // ghost communicate the boundary layers of the E-field in real space
570 std::array<FloatType *, 3u> rs_fields = {{p3m.rs_E_fields[0u].data(),
571 p3m.rs_E_fields[1u].data(),
572 p3m.rs_E_fields[2u].data()}};
573 p3m.halo_comm.spread_grid(comm_cart, rs_fields, p3m.local_mesh.dim);
574}
575
576/** @details Calculate the long range electrostatics part of the pressure
577 * tensor. This is part \f$\Pi_{\textrm{rec}, \alpha, \beta}\f$ eq. (2.7)
578 * in @cite essmann95a. The part \f$\Pi_{\textrm{corr}, \alpha, \beta}\f$
579 * eq. (2.8) is not present here since M is the empty set in our simulations.
580 */
581template <typename FloatType, Arch Architecture, class FFTConfig>
584 auto const &box_geo = *get_system().box_geo;
586
587 if (p3m.sum_q2 > 0.) {
589 kernel_ks_charge_density();
590
591 auto constexpr r2c_dir = FFTConfig::r2c_dir;
592 auto constexpr mesh_start = Utils::Vector3i::broadcast(0);
593 auto const &global_size = p3m.params.mesh;
594 auto const local_size = p3m.fft->ks_local_size();
595 auto const local_origin = p3m.fft->ks_local_ld_index();
596 auto const half_alpha_inv_sq = Utils::sqr(1. / 2. / p3m.params.alpha);
597 auto const wavevector = (2. * std::numbers::pi) * box_geo.length_inv();
598 auto const cutoff_left = 1 - local_origin[r2c_dir];
599 auto const cutoff_right = global_size[r2c_dir] / 2 - local_origin[r2c_dir];
601 auto &short_dim = local_index[r2c_dir];
602 auto diagonal = 0.;
603 std::size_t index = 0u;
606 if (short_dim <= cutoff_right) {
608 auto const kx = p3m.d_op[0u][global_index[0u]] * wavevector[0u];
609 auto const ky = p3m.d_op[1u][global_index[1u]] * wavevector[1u];
610 auto const kz = p3m.d_op[2u][global_index[2u]] * wavevector[2u];
611 auto const norm_sq =
613
614 if (norm_sq != 0.) {
615 auto cell_energy =
616 static_cast<double>(p3m.g_energy[index] *
617 std::norm(p3m.ks_charge_density[index]));
619 // k-space symmetry: double counting except in the first and
620 // last planes of the short dimension; although the wavevector
621 // points in the opposite direction in the redundant region of
622 // k-space, the product of two components of the wavevector
623 // cancels out the negative sign
624 cell_energy *= 2.;
625 }
626 auto const vterm = -2. * (1. / norm_sq + half_alpha_inv_sq);
627 auto const pref = cell_energy * vterm;
628 diagonal += cell_energy;
629 node_k_space_pressure_tensor[0u] += pref * kx * kx; /* sigma_xx */
630 node_k_space_pressure_tensor[1u] += pref * kx * ky; /* sigma_xy */
631 node_k_space_pressure_tensor[2u] += pref * kx * kz; /* sigma_xz */
632 node_k_space_pressure_tensor[4u] += pref * ky * ky; /* sigma_yy */
633 node_k_space_pressure_tensor[5u] += pref * ky * kz; /* sigma_yz */
634 node_k_space_pressure_tensor[8u] += pref * kz * kz; /* sigma_zz */
635 }
636 }
637 ++index;
638 });
639
640 node_k_space_pressure_tensor[0u] += diagonal;
641 node_k_space_pressure_tensor[4u] += diagonal;
642 node_k_space_pressure_tensor[8u] += diagonal;
646 }
647
648 return node_k_space_pressure_tensor * prefactor / (2. * box_geo.volume());
649}
650
651template <typename FloatType, Arch Architecture, class FFTConfig>
653 bool force_flag, bool energy_flag) {
654
655 auto const &system = get_system();
656 auto const &box_geo = *system.box_geo;
657#ifdef ESPRESSO_NPT
658 auto const npt_flag = force_flag and system.has_npt_enabled();
659#else
660 auto constexpr npt_flag = false;
661#endif
662 if (p3m.sum_qpart == 0u) {
663 return 0.;
664 }
665 auto &cell_structure = *system.cell_structure;
666
668 system.coulomb.impl->solver)) {
670 }
671
672 kernel_ks_charge_density();
673
674 auto scatter_force = system.cell_structure->get_scatter_force();
675 auto const &aosoa = cell_structure.get_aosoa();
676
677 // The dipole moment is only needed if we don't have metallic boundaries
678 auto const box_dipole = (p3m.params.epsilon != P3M_EPSILON_METALLIC)
679 ? std::make_optional(calc_dipole_moment(
680 comm_cart, cell_structure, box_geo))
681 : std::nullopt;
682 auto const volume = box_geo.volume();
683 auto const pref =
684 4. * std::numbers::pi / volume / (2. * p3m.params.epsilon + 1.);
685 auto energy = 0.;
686
687 /* === k-space force calculation === */
688 if (force_flag) {
689 kernel_rs_electric_field();
690
691 // assign particle forces
692 auto const force_prefac = prefactor / volume;
693 auto &particle_data = cell_structure;
694 Utils::integral_parameter<int, AssignForces, p3m_min_cao, p3m_max_cao>(
695 p3m.params.cao, p3m, force_prefac, particle_data);
696
697 // add dipole forces
698 // Eq. (3.19) @cite deserno00b
699 if (box_dipole) {
700 using execution_space = Kokkos::DefaultHostExecutionSpace;
701 auto const dm = prefactor * pref * box_dipole.value();
702 auto const n_part = cell_structure.count_local_particles();
704 "AssignForcesBoxDipole", std::size_t{0u}, n_part,
705 [&aosoa, &scatter_force, dm](auto p_index) {
706 auto access = scatter_force.access();
707 auto const q = aosoa.charge(p_index);
708 access(p_index, 0) -= q * dm[0];
709 access(p_index, 1) -= q * dm[1];
710 access(p_index, 2) -= q * dm[2];
711 });
712 }
713 }
714
715 /* === k-space energy calculation === */
716 if (energy_flag or npt_flag) {
717 auto constexpr r2c_dir = FFTConfig::r2c_dir;
718 auto constexpr mesh_start = Utils::Vector3i::broadcast(0);
719 auto const &global_size = p3m.params.mesh;
720 auto const local_size = p3m.fft->ks_local_size();
721 auto const local_origin = p3m.fft->ks_local_ld_index();
722 auto const cutoff_left = 1 - local_origin[r2c_dir];
723 auto const cutoff_right = global_size[r2c_dir] / 2 - local_origin[r2c_dir];
725 auto &short_dim = local_index[r2c_dir];
726 auto node_energy = 0.;
727 std::size_t index = 0u;
730 if (short_dim <= cutoff_right) {
731 auto const &cell_field = p3m.ks_charge_density[index];
732 auto cell_energy = static_cast<double>(p3m.g_energy[index] *
733 std::norm(cell_field));
735 // leverage symmetry of k-space: double counting except in the
736 // first and last planes of the short dimension
738 }
740 }
741 ++index;
742 });
743 node_energy /= 2. * volume;
744
745 // add up energy contributions from all mpi ranks
746 boost::mpi::reduce(::comm_cart, node_energy, energy, std::plus<>(), 0);
747 if (this_node == 0) {
748 /* self energy correction */
749 // Eq. (3.8) @cite deserno00b
750 energy -= p3m.sum_q2 * p3m.params.alpha * std::numbers::inv_sqrtpi;
751 /* net charge correction */
752 // Eq. (3.11) @cite deserno00b
753 energy -= p3m.square_sum_q * std::numbers::pi /
754 (2. * volume * Utils::sqr(p3m.params.alpha));
755 /* dipole correction */
756 // Eq. (3.9) @cite deserno00b
757 if (box_dipole) {
758 energy += pref * box_dipole.value().norm2();
759 }
760 }
761 energy *= prefactor;
762#ifdef ESPRESSO_NPT
763 if (npt_flag) {
764 get_system().npt_add_virial_contribution(energy);
765 }
766#endif
767 if (not energy_flag) {
768 energy = 0.;
769 }
770 }
771
772 return energy;
773}
774
775template <typename FloatType, Arch Architecture, class FFTConfig>
780 double m_mesh_density_min = -1., m_mesh_density_max = -1.;
781 // indicates if mesh should be tuned
782 bool m_tune_mesh = false;
783 std::pair<std::optional<int>, std::optional<int>> m_tune_limits;
784
785protected:
786 P3MParameters &get_params() override { return p3m.params; }
787
788 static constexpr std::tuple<int, int, int> get_memory_layout() {
790 auto constexpr memory_order = FFTConfig::k_space_order;
791 auto constexpr layout_col_major = std::tuple(2, 1, 0);
792 auto constexpr layout_row_major = std::tuple(0, 1, 2);
793 return (memory_order == COLUMN_MAJOR) ? layout_col_major : layout_row_major;
794 }
795
796public:
798 double prefactor, int timings,
799 decltype(m_tune_limits) tune_limits)
800 : TuningAlgorithm(system, prefactor, timings), p3m{input_p3m},
801 m_tune_limits{std::move(tune_limits)} {}
802
803 void on_solver_change() const override { m_system.on_coulomb_change(); }
804
805 void setup_logger(bool verbose) override {
806 auto const &box_geo = *m_system.box_geo;
807#ifdef ESPRESSO_CUDA
808 auto const on_gpu = Architecture == Arch::CUDA;
809#else
810 auto const on_gpu = false;
811#endif
812 m_logger = std::make_unique<TuningLogger>(
813 verbose and this_node == 0, (on_gpu) ? "CoulombP3MGPU" : "CoulombP3M",
815 m_logger->tuning_goals(p3m.params.accuracy, m_prefactor,
816 box_geo.length()[0], p3m.sum_qpart, p3m.sum_q2);
817 m_logger->log_tuning_start();
818 }
819
820 std::optional<std::string>
821 layer_correction_veto_r_cut(double r_cut) const override {
822 auto const &solver = m_system.coulomb.impl->solver;
823 if (auto actor = get_actor_by_type<ElectrostaticLayerCorrection>(solver)) {
824 return actor->veto_r_cut(r_cut);
825 }
826 return {};
827 }
828
829 std::optional<std::string> fft_decomposition_veto(
830 Utils::Vector3i const &mesh_size_r_space) const override {
831#ifdef ESPRESSO_CUDA
832 if constexpr (Architecture == Arch::CUDA) {
833 return std::nullopt;
834 }
835#endif
836 auto const [KX, KY, KZ] = get_memory_layout();
837 auto valid_decomposition = false;
838 // calculate box size in k-space
840 boost::mpi::reduce(
841 ::comm_cart, p3m.fft->ks_local_ur_index(), mesh_size_k_space,
842 [](Utils::Vector3i const &lhs, Utils::Vector3i const &rhs) {
843 return Utils::Vector3i{{std::max(lhs[0u], rhs[0u]),
844 std::max(lhs[1u], rhs[1u]),
845 std::max(lhs[2u], rhs[2u])}};
846 },
847 0);
848 if constexpr (FFTConfig::use_r2c) {
849 // adjust for reduced dimension
850 mesh_size_k_space[FFTConfig::r2c_dir] -= 1;
851 mesh_size_k_space[FFTConfig::r2c_dir] *= 2;
852 }
853 // check consistency with box size in real-space
854 if (::this_node == 0) {
855 auto const &node_grid = ::communicator.node_grid;
861 }
862 boost::mpi::broadcast(::comm_cart, valid_decomposition, 0);
863 std::optional<std::string> retval{"conflict with FFT domain decomposition"};
865 retval = std::nullopt;
866 }
867 return retval;
868 }
869
870 std::tuple<double, double, double, double>
872 double r_cut_iL) const override {
873
874 auto const &box_geo = *m_system.box_geo;
875 double alpha_L, rs_err, ks_err;
876
877 /* calc maximal real space error for setting */
878 rs_err = p3m_real_space_error(m_prefactor, r_cut_iL, p3m.sum_qpart,
879 p3m.sum_q2, 0., box_geo.length());
880
881 if (std::numbers::sqrt2 * rs_err > p3m.params.accuracy) {
882 /* assume rs_err = ks_err -> rs_err = accuracy/sqrt(2.0) -> alpha_L */
883 alpha_L = sqrt(log(std::numbers::sqrt2 * rs_err / p3m.params.accuracy)) /
884 r_cut_iL;
885 } else {
886 /* even alpha=0 is ok, however, we cannot choose it since it kills the
887 k-space error formula.
888 Anyways, this very likely NOT the optimal solution */
889 alpha_L = 0.1;
890 }
891
892 /* calculate real-space and k-space error for this alpha_L */
893 rs_err = p3m_real_space_error(m_prefactor, r_cut_iL, p3m.sum_qpart,
894 p3m.sum_q2, alpha_L, box_geo.length());
895#ifdef ESPRESSO_CUDA
896 if constexpr (Architecture == Arch::CUDA) {
897 if (this_node == 0) {
898 ks_err =
899 p3m_k_space_error_gpu(m_prefactor, mesh.data(), cao, p3m.sum_qpart,
900 p3m.sum_q2, alpha_L, box_geo.length().data());
901 }
902 boost::mpi::broadcast(comm_cart, ks_err, 0);
903 } else
904#endif
905 ks_err = p3m_k_space_error(m_prefactor, mesh, cao, p3m.sum_qpart,
906 p3m.sum_q2, alpha_L, box_geo.length());
907
908 return {Utils::Vector2d{rs_err, ks_err}.norm(), rs_err, ks_err, alpha_L};
909 }
910
911 void determine_mesh_limits() override {
912 auto const &box_geo = *m_system.box_geo;
913 auto const mesh_density =
914 static_cast<double>(p3m.params.mesh[0]) * box_geo.length_inv()[0];
915
916 if (p3m.params.mesh == Utils::Vector3i::broadcast(-1)) {
917 /* avoid using more than 1 GB of FFT arrays */
918 auto const normalized_box_dim = std::cbrt(box_geo.volume());
919 auto const max_npart_per_dim = 512.;
920 /* simple heuristic to limit the tried meshes if the accuracy cannot
921 be obtained with smaller meshes, but normally not all these
922 meshes have to be tested */
923 auto const min_npart_per_dim = std::min(
924 max_npart_per_dim, std::cbrt(static_cast<double>(p3m.sum_qpart)));
925 m_mesh_density_min = min_npart_per_dim / normalized_box_dim;
926 m_mesh_density_max = max_npart_per_dim / normalized_box_dim;
927 if (m_tune_limits.first or m_tune_limits.second) {
928 auto const &box_l = box_geo.length();
929 auto const dim = std::max({box_l[0], box_l[1], box_l[2]});
930 if (m_tune_limits.first) {
931 m_mesh_density_min = static_cast<double>(*m_tune_limits.first) / dim;
932 }
933 if (m_tune_limits.second) {
934 m_mesh_density_max = static_cast<double>(*m_tune_limits.second) / dim;
935 }
936 }
937 m_tune_mesh = true;
938 } else {
939 m_mesh_density_min = m_mesh_density_max = mesh_density;
940 assert(p3m.params.mesh[0] >= 1);
941 if (p3m.params.mesh[1] == -1 and p3m.params.mesh[2] == -1) {
942 // determine the two missing values by rescaling by the box length
943 for (auto i : {1u, 2u}) {
944 p3m.params.mesh[i] =
945 static_cast<int>(std::round(mesh_density * box_geo.length()[i]));
946 // make the mesh even in all directions
947 p3m.params.mesh[i] += p3m.params.mesh[i] % 2;
948 }
949 }
950 m_logger->report_fixed_mesh(p3m.params.mesh);
951 }
952 }
953
955 auto const &box_geo = *m_system.box_geo;
956 auto const &solver = m_system.coulomb.impl->solver;
958 auto time_best = time_sentinel;
959 auto mesh_density = m_mesh_density_min;
960 auto current_mesh = p3m.params.mesh;
961 if (m_tune_mesh) {
962 for (auto i : {0u, 1u, 2u}) {
963 current_mesh[i] =
964 static_cast<int>(std::round(box_geo.length()[i] * mesh_density));
965 // make the mesh even in all directions
966 current_mesh[i] += current_mesh[i] % 2;
967 }
968 }
969
970 while (mesh_density <= m_mesh_density_max) {
973 trial_params.cao = cao_best;
974 trial_params.cao = cao_best;
975
976 auto const trial_time =
977 get_m_time(trial_params.mesh, trial_params.cao, trial_params.r_cut_iL,
978 trial_params.alpha_L, trial_params.accuracy);
979
980 if (trial_time >= 0.) {
981 /* the optimum r_cut for this mesh is the upper limit for higher meshes,
982 everything else is slower */
983 if (has_actor_of_type<CoulombP3M>(solver)) {
984 m_r_cut_iL_max = trial_params.r_cut_iL;
985 }
986
987 if (trial_time < time_best) {
988 /* new optimum */
989 reset_n_trials();
992 } else if (trial_time > time_best + time_granularity or
993 get_n_trials() > max_n_consecutive_trials) {
994 /* no hope of further optimisation */
995 break;
996 }
997 }
998 if (m_tune_mesh) {
1000 mesh_density = current_mesh[0] / box_geo.length()[0];
1001 } else {
1002 break;
1003 }
1004 }
1005 return tuned_params;
1006 }
1007};
1008
1009template <typename FloatType, Arch Architecture, class FFTConfig>
1011 auto &system = get_system();
1012 auto const &box_geo = *system.box_geo;
1013 if (p3m.params.alpha_L == 0. and p3m.params.alpha != 0.) {
1014 p3m.params.alpha_L = p3m.params.alpha * box_geo.length()[0];
1015 }
1016 if (p3m.params.r_cut_iL == 0. and p3m.params.r_cut != 0.) {
1017 p3m.params.r_cut_iL = p3m.params.r_cut * box_geo.length_inv()[0];
1018 }
1019 if (not is_tuned()) {
1020 count_charged_particles();
1021 if (p3m.sum_qpart == 0) {
1022 throw std::runtime_error(
1023 "CoulombP3M: no charged particles in the system");
1024 }
1025 try {
1027 system, p3m, prefactor, tuning.timings, tuning.limits);
1028 parameters.setup_logger(tuning.verbose);
1029 // parameter ranges
1030 parameters.determine_mesh_limits();
1031 parameters.determine_r_cut_limits();
1032 parameters.determine_cao_limits(7);
1033 // run tuning algorithm
1034 parameters.tune();
1035 m_is_tuned = true;
1036 system.on_coulomb_change();
1037 } catch (...) {
1038 p3m.params.tuning = false;
1039 throw;
1040 }
1041 }
1042 init();
1043}
1044
1046 auto const &system = get_system();
1047 auto const &box_geo = *system.box_geo;
1048 auto const &local_geo = *system.local_geo;
1049 for (auto i = 0u; i < 3u; i++) {
1050 /* check k-space cutoff */
1051 if (p3m_params.cao_cut[i] >= box_geo.length_half()[i]) {
1052 std::stringstream msg;
1053 msg << "P3M_init: k-space cutoff " << p3m_params.cao_cut[i]
1054 << " is larger than half of box dimension " << box_geo.length()[i];
1055 throw std::runtime_error(msg.str());
1056 }
1057 if (p3m_params.cao_cut[i] >= local_geo.length()[i]) {
1058 std::stringstream msg;
1059 msg << "P3M_init: k-space cutoff " << p3m_params.cao_cut[i]
1060 << " is larger than local box dimension " << local_geo.length()[i];
1061 throw std::runtime_error(msg.str());
1062 }
1063 }
1064
1066 if ((box_geo.length()[0] != box_geo.length()[1]) or
1067 (box_geo.length()[1] != box_geo.length()[2]) or
1068 (p3m_params.mesh[0] != p3m_params.mesh[1]) or
1069 (p3m_params.mesh[1] != p3m_params.mesh[2])) {
1070 throw std::runtime_error(
1071 "CoulombP3M: non-metallic epsilon requires cubic box");
1072 }
1073 }
1074}
1075
1077 auto const &box_geo = *get_system().box_geo;
1078 if (!box_geo.periodic(0) or !box_geo.periodic(1) or !box_geo.periodic(2)) {
1079 throw std::runtime_error(
1080 "CoulombP3M: requires periodicity (True, True, True)");
1081 }
1082}
1083
1085 auto const &local_geo = *get_system().local_geo;
1086 if (local_geo.cell_structure_type() != CellStructureType::REGULAR and
1087 local_geo.cell_structure_type() != CellStructureType::HYBRID) {
1088 throw std::runtime_error(
1089 "CoulombP3M: requires the regular or hybrid decomposition cell system");
1090 }
1091 if (::communicator.size > 1 and
1092 local_geo.cell_structure_type() == CellStructureType::HYBRID) {
1093 throw std::runtime_error(
1094 "CoulombP3M: does not work with the hybrid decomposition cell system, "
1095 "if using more than one MPI node");
1096 }
1097}
1098
1099template <typename FloatType, Arch Architecture, class FFTConfig>
1101 auto const &box_geo = *get_system().box_geo;
1102 p3m.params.r_cut = p3m.params.r_cut_iL * box_geo.length()[0];
1103 p3m.params.alpha = p3m.params.alpha_L * box_geo.length_inv()[0];
1104 p3m.params.recalc_a_ai_cao_cut(box_geo.length());
1106 sanity_checks_boxl();
1107 calc_influence_function_force();
1108 calc_influence_function_energy();
1109 p3m.halo_comm.resize(::comm_cart, p3m.local_mesh);
1110}
1111
1112#ifdef ESPRESSO_CUDA
1113template <typename FloatType, Arch Architecture, class FFTConfig>
1114void CoulombP3MImpl<FloatType, Architecture,
1115 FFTConfig>::add_long_range_forces_gpu() {
1116 if constexpr (Architecture == Arch::CUDA) {
1117#ifdef ESPRESSO_NPT
1118 if (get_system().has_npt_enabled()) {
1119 get_system().npt_add_virial_contribution(long_range_energy());
1120 }
1121#endif
1122 if (this_node == 0) {
1123 auto &gpu = *get_system().gpu;
1124 p3m_gpu_add_farfield_force(*m_gpu_data, gpu, prefactor,
1125 gpu.n_particles());
1126 }
1127 }
1128}
1129
1130/* Initialize the CPU kernels.
1131 * This operation is time-consuming and sets up data members
1132 * that are only relevant for ELC force corrections, since the
1133 * GPU implementation uses CPU kernels to compute energies.
1134 */
1135template <typename FloatType, Arch Architecture, class FFTConfig>
1137 if constexpr (Architecture == Arch::CUDA) {
1138 auto &system = get_system();
1140 system.coulomb.impl->solver)) {
1141 init_cpu_kernels();
1142 }
1143 p3m_gpu_init(m_gpu_data, p3m.params.cao, p3m.params.mesh, p3m.params.alpha,
1144 system.box_geo->length(), system.gpu->n_particles());
1145 }
1146}
1147
1148template <typename FloatType, Arch Architecture, class FFTConfig>
1150 if constexpr (Architecture == Arch::CUDA) {
1151 auto &gpu_particle_data = *get_system().gpu;
1155 }
1156}
1157#endif // ESPRESSO_CUDA
1158
1159#endif // ESPRESSO_P3M
@ HYBRID
Hybrid decomposition.
@ REGULAR
Regular decomposition.
Vector implementation and trait types for boost qvm interoperability.
Describes a cell structure / cell system.
std::size_t count_local_particles() const
std::optional< std::string > layer_correction_veto_r_cut(double r_cut) const override
TuningAlgorithm::Parameters get_time() override
void setup_logger(bool verbose) override
std::tuple< double, double, double, double > calculate_accuracy(Utils::Vector3i const &mesh, int cao, double r_cut_iL) const override
void on_solver_change() const override
CoulombTuningAlgorithm(System::System &system, auto &input_p3m, double prefactor, int timings, decltype(m_tune_limits) tune_limits)
static constexpr std::tuple< int, int, int > get_memory_layout()
std::optional< std::string > fft_decomposition_veto(Utils::Vector3i const &mesh_size_r_space) const override
P3MParameters & get_params() override
Main system class.
void npt_add_virial_contribution(double energy)
Definition npt.cpp:137
std::shared_ptr< GpuParticleData > gpu
bool has_npt_enabled() const
Coulomb::Solver coulomb
std::shared_ptr< BoxGeometry > box_geo
Tuning algorithm for P3M.
System::System & m_system
std::unique_ptr< TuningLogger > m_logger
DEVICE_QUALIFIER constexpr pointer data() noexcept
Definition Array.hpp:132
T norm() const
Definition Vector.hpp:160
static DEVICE_QUALIFIER constexpr Vector< T, N > broadcast(typename Base::value_type const &value) noexcept
Create a vector that has all entries set to the same value.
Definition Vector.hpp:132
Cache for interpolation weights.
void zfill(std::size_t size)
Fill cache with zero-initialized data.
void store(InterpolationWeights< cao > const &weights)
Push back weights for one point.
cudaStream_t stream[1]
CUDA streams for parallel computing on CPU and GPU.
Communicator communicator
boost::mpi::communicator comm_cart
The communicator.
int this_node
The number of this node.
constexpr auto round_error_prec
Precision below which a double-precision float is assumed to be zero.
Definition config.hpp:47
void charge_assign(elc_data const &elc, CoulombP3M &solver, auto const &cs)
Definition elc.cpp:1114
ELC algorithm for long-range Coulomb interactions.
This file contains the errorhandling code for severe errors, like a broken bond or illegal parameter ...
void pad_with_zeros_discard_imag_into(OutValue *out, std::span< T > cropped_array, Utils::Vector3i const &cropped_dim, Utils::Vector3i const &pad_left, Utils::Vector3i const &pad_right)
Pad a 3D matrix with zeros to restore halo regions, writing into a caller-provided buffer of product(...
and std::invocable< Projector, unsigned, int > void for_each_3d(detail::IndexVectorConcept auto &&start, detail::IndexVectorConcept auto &&stop, detail::IndexVectorConcept auto &&counters, Kernel &&kernel, Projector &&projector=detail::noop_projector)
Repeat an operation on every element of a 3D grid.
std::vector< FloatType > grid_influence_function(P3MParameters const &params, Utils::Vector3i const &n_start, Utils::Vector3i const &n_stop, Utils::Vector3d const &inv_box_l)
Map influence function over a grid.
void p3m_interpolate(P3MLocalMesh const &local_mesh, WeightsStorage< cao > const &weights, Kernel kernel)
P3M grid interpolation.
constexpr int p3m_min_cao
Minimal charge assignment order.
Definition math.hpp:48
constexpr int p3m_max_cao
Maximal charge assignment order.
Definition math.hpp:50
#define P3M_BRILLOUIN
P3M: Number of Brillouin zones taken into account in the calculation of the optimal influence functio...
Definition math.hpp:38
System & get_system()
T product(Vector< T, N > const &v)
Definition Vector.hpp:383
VectorXd< 3 > Vector3d
Definition Vector.hpp:193
DEVICE_QUALIFIER constexpr T sqr(T x)
Calculates the SQuaRe of x.
Definition sqr.hpp:28
MemoryOrder
Definition index.hpp:33
DEVICE_QUALIFIER auto sinc(T x)
Calculate the function .
Definition math.hpp:71
auto get_analytic_cotangent_sum_kernel(int cao)
Definition math.hpp:146
STL namespace.
Exports for the NpT code.
auto constexpr P3M_EPSILON_METALLIC
This value indicates metallic boundary conditions.
P3M algorithm for long-range Coulomb interaction.
double p3m_k_space_error(double pref, Utils::Vector3i const &mesh, int cao, std::size_t n_c_part, double sum_q2, double alpha_L, Utils::Vector3d const &box_l)
Calculate the analytic expression of the error estimate for the P3M method in (eq.
std::complex< FloatType > multiply_complex_by_real(std::complex< FloatType > const &z, FloatType k)
auto p3m_tune_aliasing_sums(Utils::Vector3i const &shift, Utils::Vector3i const &mesh, Utils::Vector3d const &mesh_i, int cao, double alpha_L_i)
Aliasing sum used by p3m_k_space_error.
double p3m_real_space_error(double pref, double r_cut_iL, std::size_t n_c_part, double sum_q2, double alpha_L, Utils::Vector3d const &box_l)
Calculate the real space contribution to the rms error in the force (as described by Kolafa and Perra...
std::complex< FloatType > multiply_complex_by_imaginary(std::complex< FloatType > const &z, FloatType k)
auto calc_dipole_moment(boost::mpi::communicator const &comm, auto const &cs, auto const &box_geo)
bool is_node_grid_compatible_with_mesh(Utils::Vector3i const &node_grid, Utils::Vector3i const &mesh)
void p3m_gpu_add_farfield_force(P3MGpuParams &data, GpuParticleData &gpu, double prefactor, std::size_t n_part)
The long-range part of the P3M algorithm.
void p3m_gpu_init(std::shared_ptr< P3MGpuParams > &data, int cao, Utils::Vector3i const &mesh, double alpha, Utils::Vector3d const &box_l, std::size_t n_part)
Initialize the internal data structure of the P3M GPU.
P3M electrostatics on GPU.
double p3m_k_space_error_gpu(double prefactor, const int *mesh, int cao, int npart, double sum_q2, double alpha_L, const double *box)
Utils::Vector3i node_grid
void charge_assign() override
double long_range_kernel(bool force_flag, bool energy_flag)
Compute the k-space part of forces and energies.
Utils::Vector9d long_range_pressure() override
void scaleby_box_l() override
void assign_charge(double q, Utils::Vector3d const &real_pos, bool skip_cache) override
Base class for the electrostatics P3M algorithm.
Definition p3m.impl.hpp:63
std::shared_ptr< P3MFFTBackend< FloatType, FFTConfig > > fft
Definition p3m.impl.hpp:94
p3m_interpolation_cache inter_weights
Definition p3m.impl.hpp:79
FloatType value_type
Definition p3m.impl.hpp:65
std::size_t sum_qpart
number of charged particles.
Definition p3m.impl.hpp:73
p3m_send_mesh< FloatType > halo_comm
Definition p3m.impl.hpp:91
double sum_q2
Sum of square of charges.
Definition p3m.impl.hpp:75
void sanity_checks_periodicity() const
void sanity_checks_boxl() const
Checks for correctness of the k-space cutoff.
void sanity_checks_cell_structure() const
P3MParameters const & p3m_params
Definition p3m.hpp:56
std::unique_ptr< Implementation > impl
Pointer-to-implementation.
static constexpr std::size_t force
static constexpr std::size_t pos
static constexpr std::size_t q
Interpolation weights for one point.
void recalc_ld_pos(P3MParameters const &params)
Recalculate quantities derived from the mesh and box length: ld_pos (position of the left down mesh).
Structure to hold P3M parameters and some dependent variables.
Utils::Vector3d cao_cut
cutoff for charge assignment.
double alpha
unscaled alpha_L for use with fast inline functions only
double r_cut_iL
cutoff radius for real space electrostatics (>0), rescaled to r_cut_iL = r_cut * box_l_i.
int cao
charge assignment order ([0,7]).
double accuracy
accuracy of the actual parameter set.
double alpha_L
Ewald splitting parameter (0.
double r_cut
unscaled r_cut_iL for use with fast inline functions only
void recalc_a_ai_cao_cut(Utils::Vector3d const &box_l)
Recalculate quantities derived from the mesh and box length: a, ai and cao_cut.
bool tuning
tuning or production?
Utils::Vector3i mesh
number of mesh points per coordinate direction (>0), in real space.
double epsilon
epsilon of the "surrounding dielectric".
P3MLocalMesh local_mesh
Local mesh geometry information for this MPI rank.
P3MParameters params
P3M base parameters.
Struct holding all information for one particle.
Definition Particle.hpp:436
constexpr auto const & pos() const
Definition Particle.hpp:476
constexpr auto const & image_box() const
Definition Particle.hpp:489
constexpr auto const & q() const
Definition Particle.hpp:597
void operator()(auto &p3m, double q, Utils::Vector3d const &real_pos, p3m_interpolation_cache &inter_weights)
void operator()(auto &p3m, double q, Utils::Vector3d const &real_pos)
void operator()(auto &p3m, double q, InterpolationWeights< cao > const &weights)
void operator()(auto &p3m, auto force_prefac, CellStructure &cell_structure) const