shapes/include/shapes/Cylinder.hpp

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/*
 * Copyright (C) 2010-2022 The ESPResSo project
 * Copyright (C) 2002,2003,2004,2005,2006,2007,2008,2009,2010
 *   Max-Planck-Institute for Polymer Research, Theory Group
 *
 * This file is part of ESPResSo.
 *
 * ESPResSo is free software: you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation, either version 3 of the License, or
 * (at your option) any later version.
 *
 * ESPResSo is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program.  If not, see <http://www.gnu.org/licenses/>.
 */
 
#ifndef SRC_SHAPES_CYLINDER_HPP
#define SRC_SHAPES_CYLINDER_HPP
 
#include "Shape.hpp"
 
#include <utils/Vector.hpp>
 
#include <utility>
 
namespace Shapes {
class Cylinder : public Shape {
public:
  /** center of the cylinder. */
  Utils::Vector3d m_center;
  /** Axis of the cylinder. */
  Utils::Vector3d m_axis;
  /** cylinder radius. */
  double m_rad;
  /** cylinder length. */
  double m_length;
  /** whether to ignore bottom and top cap of cylinder */
  bool m_open;
  /** direction -1: inside, +1 outside */
  double m_direction;
 
  /** Center of smoothing circle */
  double m_half_length;
  /** Unit vector in z direction */
  Utils::Vector3d e_z;
 
  /** Alternative e_r for corner case */
  Utils::Vector3d e_r_axis;
 
  /** @brief Calculate derived parameters. */
  void precalc() {
    m_half_length = 0.5 * m_length;
 
    e_z = m_axis / m_axis.norm();
 
    /* Find a vector orthogonal to e_z, since {1,0,0} and
       {0,1,0} are independent, e_z can not be parallel to both
       of them. Then we can do Gram-Schmidt */
    if ((Utils::Vector3d{1., 0., 0} * e_z) < 1.)
      e_r_axis =
          Utils::Vector3d{1., 0., 0} - (e_z * Utils::Vector3d{1., 0., 0}) * e_z;
    else
      e_r_axis =
          Utils::Vector3d{0., 1., 0} - (e_z * Utils::Vector3d{0., 1., 0}) * e_z;
 
    e_r_axis.normalize();
  }
 
  std::pair<double, double> dist_half_pore(double r, double z) const;
 
public:
  Cylinder()
      : m_center({0.0, 0.0, 0.0}), m_axis({1.0, 0.0, 0.0}), m_rad(0),
        m_length(0.0), m_open(false), m_direction(1.0) {
    precalc();
  }
 
  double radius() const { return m_rad; }
  void set_radius(double const &radius) {
    m_rad = radius;
    precalc();
  }
 
  double length() const { return m_length; }
  void set_length(double const &length) {
    m_length = length;
    precalc();
  }
 
  Utils::Vector3d const &axis() const { return m_axis; }
  void set_axis(Utils::Vector3d const &axis) {
    m_axis = axis;
    precalc();
  }
 
  Utils::Vector3d &center() { return m_center; }
  bool &open() { return m_open; }
  double &direction() { return m_direction; }
 
  void calculate_dist(const Utils::Vector3d &pos, double &dist,
                      Utils::Vector3d &vec) const override;
};
} // namespace Shapes
#endif